Gene omics information

Query gene ID	Zm.7122.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.0	Zm.7122.1.A1_at	AY111472.1	-	-	2e+0	At1g35580	CINV1 (cytosolic invertase 1)	S.X.	H.G.	Please select
0.67	85.8	Zm.405.1.A1_at	AF037034.2	hypothetical LOC541674	-	2e-1	At5g05340	peroxidase, putative	S.X.	H.G.	Please select
0.60	77.8	Zm.2942.1.A1_at	AY105337.1	replication factor C subunit 2	-	8e-38	At1g21690	emb1968 (embryo defective 1968)	S.X.	H.G.	Please select
0.48	61.3	Zm.2952.1.A1_a_at	CF629660	hypothetical protein LOC100192920	-	2e-3	At3g26680	SNM1 (SENSITIVE TO NITROGEN MUSTARD 1)	S.X.	H.G.	Please select
0.25	21.3	Zm.7121.2.S1_at	AF457960.1	-	-	5e-6	At3g12120	FAD2 (FATTY ACID DESATURASE 2)	S.X.	H.G.	Please select
0.20	14.2	Zm.17316.1.A1_at	CK369406	-	-	4e+0	At5g38317	LCR58 (Low-molecular-weight cysteine-rich 58)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
21.1	99.4	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.3	98.9	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.4	98.9	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.9	97.9	GSM162267	Mutant 1 with array type maize from Affymetrix	GSE7030	Phenotypic and molecular characterisation of a novel Bt2 allele in maize
5.7	97.2	GSM320456	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.3	96.1	GSM320457	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.0	95.8	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.0	95.8	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.9	95.7	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.7	95.4	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	1e+0	34	Zm.4137.1.S1_at	AI855128	-	-	2e+0	At4g21330	DYT1 (DYSFUNCTIONAL TAPETUM 1)	C.G.	S.X.	Please select
0.01	1e+0	34	Zm.3219.1.S1_a_at	AY197352.1	beta-expansin 9 protein	-	9e+0	At4g32950	protein phosphatase 2C, putative / PP2C, putative	C.G.	S.X.	Please select
0.01	1e+0	34	Zm.15586.1.S1_at	CD448564	hypothetical protein LOC100273983	-	6e-17	At4g32140	-	C.G.	S.X.	Please select
0.01	4e+0	32	Zm.9963.1.S1_at	AI737691	-	-	4e-68	At5g49910	CPHSC70-2EAT SHOCK PROTEIN 70-2 (CHLOROPLAST HEAT SHOCK PROTEIN 70-2)	C.G.	S.X.	Please select
0.02	4e+0	32	Zm.9301.1.A1_at	CB351339	-	-	1e+0	At4g38740	ROC1 (ROTAMASE CYP 1)	C.G.	S.X.	Please select
0.02	4e+0	32	Zm.9425.2.A1_x_at	BM350860	hypothetical protein LOC100274829	-	9e-1	At2g35430	zinc finger (CCCH-type) family protein	C.G.	S.X.	Please select
0.02	4e+0	32	Zm.8314.1.A1_at	BM953578	hypothetical protein LOC100277461	-	6e+0	At2g38640	unknown protein	C.G.	S.X.	Please select
0.01	4e+0	32	Zm.4871.1.A1_at	AY109978.1	growth-regulating factor 1	-	1e-18	At2g22840	AtGRF1 (GROWTH-REGULATING FACTOR 1)	C.G.	S.X.	Please select
0.02	4e+0	32	Zm.18319.1.A1_at	CO531171	hypothetical protein LOC100216754	-	2e+0	At1g22190	AP2 domain-containing transcription factor, putative	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	2e+0	34	Arabidopsis thaliana	At1g35580	840454	CINV1 (cytosolic invertase 1)	Encodes a protein with cytosolic (alkaline/neutral) invertase activity. The protein was shown to interact with PIP5K9.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	9e-1	36	Glycine max	HgAffx.23360.1.S1_at	CD748639	-	-	1e+0	At3g63250	HMT2 (HOMOCYSTEINE METHYLTRANSFERASE 2)	C.G.	S.X.	Please select
0.41	3e-109	395	Hordeum vulgare	Contig8802_at	Contig8802	-	-	2e-3	At5g51510	unknown protein	C.G.	S.X.	Please select
0.35	6e-98	359	Oryza sativa	Os.14040.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	1e+1	32	Populus trichocarpa	PtpAffx.66655.1.S1_at	CK107251	-	-	3e-2	At5g45940	atnudt11 (Arabidopsis thaliana Nudix hydrolase homolog 11)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.66	0	1088	Triticum aestivum	TaAffx.85241.1.S1_at	CA624495	-	-	6e+0	At1g74300	esterase/lipase/thioesterase family protein	C.G.	S.X.	Please select
0.03	7e-1	34	Vitis vinifera	1612352_at	CA814426	-	-	4e-1	At1g11520	pliceosome associated protein-related	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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