Gene omics information

Query gene ID	Zm.7090.1.S1_at
Gene name	hypothetical protein LOC100191899
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.0	Zm.7090.1.S1_at	AY105718.1	hypothetical protein LOC100191899	-	6e+0	At5g01740	-	S.X.	H.G.	Please select
0.83	95.6	Zm.7091.1.A1_x_at	U23190.1	chlorophyll a/b-binding apoprotein CP24 precursor	-	3e-15	At1g15820	LHCB6 (LIGHT HARVESTING COMPLEX PSII SUBUNIT 6)	S.X.	H.G.	Please select
0.77	92.1	Zm.5823.1.A1_at	CO520297	hypothetical protein LOC100194104	-	2e-10	At1g14310	haloacid dehalogenase-like hydrolase family protein	S.X.	H.G.	Please select
0.57	75.1	Zm.16532.4.S1_x_at	BI423682	60S ribosomal protein L18a	-	7e-68	At2g34480	60S ribosomal protein L18A (RPL18aB)	S.X.	H.G.	Please select
0.48	61.3	Zm.606.1.A2_s_at	AF326493.1	plasma membrane integral protein ZmPIP2-2 /// plasma membrane intrinsic protein2	-	1e-37	At2g37180	RD28 (RESPONSIVE TO DESICCATION 28)	S.X.	H.G.	Please select
0.47	59.9	Zm.4863.1.S1_at	AW600383	-	-	2e-1	At2g38465	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
21.5	99.4	GSM385710	Deep-sowing 10d treatment TIBA, biological rep2	GSE15371	Auxin-induced gene expression in mesocotyl elongation of maize inbred line 3681-4 tolerant to deep-sowing
17.5	99.1	GSM385709	Deep-sowing 10d treatment TIBA, biological rep1	GSE15371	Auxin-induced gene expression in mesocotyl elongation of maize inbred line 3681-4 tolerant to deep-sowing
10.8	98.5	GSM375796	Deep-sowing 10d treatment GA3, biological rep2	GSE15048	Gibberellin-induced gene expression in maize mesocotyl under deep-sowing condition
10.6	98.4	GSM375788	Deep-sowing 10d treatment Control, biological rep1	GSE15048	Gibberellin-induced gene expression in maize mesocotyl under deep-sowing condition
9.9	98.3	GSM375795	Deep-sowing 10d treatment Control, biological rep2	GSE15048	Gibberellin-induced gene expression in maize mesocotyl under deep-sowing condition
8.5	98.1	GSM253282	ZM_8d_SG200_3Alu_III	GSE10023	Maize gene expression during infection with Ustilago maydis
8.4	98.1	GSM375791	Deep-sowing 10d treatment GA3, biological rep1	GSE15048	Gibberellin-induced gene expression in maize mesocotyl under deep-sowing condition
7.9	97.9	GSM385708	Deep-sowing 10d treatment IAA, biological rep2	GSE15371	Auxin-induced gene expression in mesocotyl elongation of maize inbred line 3681-4 tolerant to deep-sowing
7.3	97.8	GSM385707	Deep-sowing 10d treatment IAA, biological rep1	GSE15371	Auxin-induced gene expression in mesocotyl elongation of maize inbred line 3681-4 tolerant to deep-sowing
5.7	97.2	GSM253281	ZM_8d_SG200_3Alu_II	GSE10023	Maize gene expression during infection with Ustilago maydis

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.09	2e-4	46	Zm.5909.1.A1_at	AI665315	Hypothetical protein LOC100192467	-	3e+0	At2g01370	DNA-binding storekeeper protein-related	C.G.	S.X.	Please select
0.09	2e-4	46	Zm.5909.1.S1_at	AI665315	Hypothetical protein LOC100192467	-	3e+0	At2g01370	DNA-binding storekeeper protein-related	C.G.	S.X.	Please select
0.03	1e-2	40	Zm.8268.1.S1_at	CK826607	thioredoxin M-type	-	1e-1	At5g39950	ATTRX2 (THIOREDOXIN 2)	C.G.	S.X.	Please select
0.02	1e-2	40	Zm.6207.4.A1_at	BQ538453	Hypothetical protein LOC100194345	-	6e-19	At2g04390	40S ribosomal protein S17 (RPS17A)	C.G.	S.X.	Please select
0.02	4e-2	38	Zm.1861.1.S1_at	CF009566	-	-	2e+0	At5g45040	cytochrome c6 (ATC6)	C.G.	S.X.	Please select
0.02	2e-1	36	Zm.7736.1.S1_at	AF019146.1	maize insect resistance2	-	4e-3	At2g34080	cysteine proteinase, putative	C.G.	S.X.	Please select
0.01	2e-1	36	Zm.423.1.S1_at	AF019297.1	starch synthase isoform zSTSII-2	-	3e-7	At3g01180	AtSS2 (starch synthase 2)	C.G.	S.X.	Please select
0.02	2e-1	36	Zm.2458.1.S1_at	CA403461	hypothetical protein LOC100273658	-	3e-108	At5g62700	TUB3	C.G.	S.X.	Please select
0.01	2e-1	36	Zm.18795.1.S1_at	CO526138	hypothetical protein LOC100273526	-	2e-8	At5g11350	endonuclease/exonuclease/phosphatase family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	6e+0	32	Arabidopsis thaliana	At5g01740	831686	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PB	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.07	2e-7	57	Glycine max	Gma.4589.1.S1_s_at	BQ133572	-	-	1e-1	At3g10985	SAG20 (SENESCENCE ASSOCIATED GENE 20)	C.G.	S.X.	Please select
0.23	9e-53	206	Hordeum vulgare	Contig6902_at	Contig6902	-	-	3e-1	At4g13720	inosine triphosphate pyrophosphatase, putative / HAM1 family protein	C.G.	S.X.	Please select
0.25	1e-30	135	Oryza sativa	Os03g0299600	AK068151.1	-	The start codon is not identified.	2e-1	At3g15670	late embryogenesis abundant protein, putative / LEA protein, putative	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	6e-1	36	Populus trichocarpa	PtpAffx.202890.1.S1_at	pmrna5719	hypothetical protein	-	1e+0	At1g70895	CLE17 (CLAVATA3/ESR-RELATED 17)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.37	2e-40	167	Triticum aestivum	Ta.23045.2.S1_x_at	CA597036	-	-	1e+0	At3g09310	unknown protein	C.G.	S.X.	Please select
0.09	5e-7	54	Vitis vinifera	1611765_at	BQ799728	hypothetical protein LOC100248412	-	2e+0	At5g19230	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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