Gene omics information

Query gene ID	Zm.7073.2.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.73	89.9	Zm.7073.2.A1_at	AI600777	-	-	1e-2	At5g37260	RVE2 (REVEILLE 2)	S.X.	H.G.	Please select
0.91	99.0	Zm.5990.2.A1_at	AI834730	-	-	8e+0	At5g59510	RTFL5 (ROTUNDIFOLIA LIKE 5)	S.X.	H.G.	Please select
0.61	79.5	Zm.599.2.S1_a_at	AY111360.1	chromomethylase	-	2e+0	At3g30350	unknown protein	S.X.	H.G.	Please select
0.60	77.8	Zm.7341.1.A1_at	BM267652	TFIIB-related protein	-	2e-14	At4g36650	ATPBRP (PLANT-SPECIFIC TFIIB-RELATED PROTEIN)	S.X.	H.G.	Please select
0.50	65.7	Zm.599.2.A1_at	AY111360.1	Chromomethylase	-	2e+0	At3g30350	unknown protein	S.X.	H.G.	Please select
0.47	59.9	Zm.11259.1.A1_at	AI966828	m19 protein	-	1e-2	At4g18960	AG (AGAMOUS)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
40.7	99.9	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
33.1	99.9	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
33.0	99.8	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
25.2	99.6	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
24.5	99.6	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
21.9	99.4	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.7	99.0	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.9	98.8	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.9	98.6	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.6	97.6	GSM320460	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	5e-3	42	Zm.12889.1.A1_at	CK371449	hypothetical protein LOC100193022	-	3e+0	At3g22020	-	C.G.	S.X.	Please select
0.01	2e-2	40	Zm.3528.1.S1_at	BQ295787	hypothetical protein LOC100191820	-	5e-8	At4g10610	CID12	C.G.	S.X.	Please select
0.02	1e+0	34	Zm.9933.1.A1_at	BM349388	-	-	2e-5	At2g19160	unknown protein	C.G.	S.X.	Please select
0.01	1e+0	34	Zm.18499.1.S1_at	CO533098	hypothetical protein LOC100193919	-	7e-1	At1g01750	ADF11 (ACTIN DEPOLYMERIZING FACTOR 11)	C.G.	S.X.	Please select
0.01	1e+0	34	Zm.17560.1.A1_at	CF626464	hypothetical protein LOC100277164	-	1e-3	At1g08340	rac GTPase activating protein, putative	C.G.	S.X.	Please select
0.02	1e+0	34	Zm.11595.1.A1_at	BM379199	hypothetical protein LOC100194210	-	4e+0	At3g28500	60S acidic ribosomal protein P2 (RPP2C)	C.G.	S.X.	Please select
0.01	5e+0	32	Zm.9778.1.A1_at	BM338606	outer envelope protein	-	3e-3	At2g43950	OEP37	C.G.	S.X.	Please select
0.01	5e+0	32	Zm.5891.1.A1_at	AW331015	-	-	8e-6	At1g16860	merozoite surface protein-related	C.G.	S.X.	Please select
0.01	5e+0	32	Zm.4309.1.S1_at	AW052961	respiratory burst oxidase protein B	-	1e-25	At1g64060	ATRBOH F (ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE PROTEIN F)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.07	1e-2	42	Arabidopsis thaliana	At5g37260	833700	RVE2 (REVEILLE 2)	Encodes a MYB family transcription factor Circadian 1 (CIR1). Involved in circadian regulation in Arabidopsis.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.07	5e-12	73	Glycine max	GmaAffx.3765.2.A1_at	BF066505	MYB transcription factor MYB114	-	1e-10	At2g46830	CCA1 (CIRCADIAN CLOCK ASSOCIATED 1)	C.G.	S.X.	Please select
0.11	4e-75	282	Hordeum vulgare	Contig3873_at	Contig3873	-	-	3e-20	At1g01060	LHY (LATE ELONGATED HYPOCOTYL)	C.G.	S.X.	Please select
0.19	1e-108	395	Oryza sativa	Os08g0157600	AY452478.1	-	Myb, DNA-binding domain containing protein	5e-31	At1g01060	LHY (LATE ELONGATED HYPOCOTYL)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.07	3e-13	77	Populus trichocarpa	PtpAffx.7997.1.S1_at	BU868664	hypothetical protein	-	2e-10	At2g46830	CCA1 (CIRCADIAN CLOCK ASSOCIATED 1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.09	2e-23	111	Triticum aestivum	TaAffx.119260.1.S1_at	CF182121	-	-	6e+0	At5g40630	ubiquitin family protein	C.G.	S.X.	Please select
0.02	2e-5	50	Vitis vinifera	1607032_s_at	CB345316	hypothetical protein LOC100250535	-	2e-18	At1g01060	LHY (LATE ELONGATED HYPOCOTYL)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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