CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Zm.7054.1.S1_at

Gene name actin-depolymerizing factor 6

Organism Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.73 89.9 Zm.7054.1.S1_at BM331766 actin-depolymerizing factor 6 - 6e-4 At5g59890 ADF4 (ACTIN DEPOLYMERIZING FACTOR 4) S.X. H.G.
0.77 92.1 Zm.15242.1.A1_at BM340075 - - 1e+1 At3g16712 unknown protein S.X. H.G.
0.46 58.4 Zm.12184.1.A1_at BM380021 - - 6e-10 At4g11960 PGRL1B (PGR5-Like B) S.X. H.G.
0.42 51.3 ZmAffx.89.1.A1_at AI665353 hypothetical protein LOC100277768 - 1e+1 At5g20560 beta-1,3-glucanase, putative S.X. H.G.
0.40 48.5 Zm.13228.1.S1_at CA452580 LHT1 - 5e+0 At4g17585 unknown protein S.X. H.G.
0.32 33.4 Zm.127.3.A1_a_at AI677333 octopine synthase binding factor1 - 6e+0 At5g04080 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
6.4 97.5 GSM320446 protocol: mRNA - genotype: CML69 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.3 96.9 GSM320445 protocol: mRNA - genotype: CML69 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.0 96.7 GSM320444 protocol: mRNA - genotype: CML69 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.9 96.7 GSM253269 ZM_4.5d_Mock_3inf_II GSE10023 Maize gene expression during infection with Ustilago maydis
4.6 96.4 GSM253270 ZM_4.5d_Mock_3inf_III GSE10023 Maize gene expression during infection with Ustilago maydis
4.5 96.3 GSM253268 ZM_4.5d_Mock_3inf_I GSE10023 Maize gene expression during infection with Ustilago maydis
4.4 96.2 GSM320439 protocol: mRNA - genotype: B73 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.4 96.2 GSM320438 protocol: mRNA - genotype: B73 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.0 95.8 GSM320442 protocol: mRNA - genotype: Mo17 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.9 95.7 GSM320440 protocol: mRNA - genotype: B73 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 3e-7 56 Zm.2992.1.A1_a_at BQ619311 actin depolymerizing factor - 4e-11 At5g59890 ADF4 (ACTIN DEPOLYMERIZING FACTOR 4) C.G. S.X.
0.04 3e-7 56 Zm.2992.1.A1_x_at BQ619311 actin depolymerizing factor - 4e-11 At5g59890 ADF4 (ACTIN DEPOLYMERIZING FACTOR 4) C.G. S.X.
0.04 3e-7 56 Zm.2992.1.A1_at BQ619311 actin depolymerizing factor - 4e-11 At5g59890 ADF4 (ACTIN DEPOLYMERIZING FACTOR 4) C.G. S.X.
0.03 1e-6 54 Zm.8854.1.A1_at BM332798 - - 4e-1 At5g05987 PRA1.A2 (PRENYLATED RAB ACCEPTOR 1.A2) C.G. S.X.
0.03 1e-6 54 Zm.4834.1.S1_at CF602448 hypothetical protein LOC100279345 - 4e+0 At5g26890 unknown protein C.G. S.X.
0.02 1e-6 54 Zm.4515.1.S1_at CO528625 hypothetical protein LOC100272651 - 2e-2 At1g79090 unknown protein C.G. S.X.
0.04 1e-6 54 Zm.2684.1.A1_at AW066853 - - 3e+0 At1g49510 emb1273 (embryo defective 1273) C.G. S.X.
0.02 1e-6 54 Zm.17941.2.S1_at CO531496 Hypothetical protein LOC100193170 - 2e-3 At1g47740 unknown protein C.G. S.X.
0.03 1e-6 54 Zm.16059.1.S1_at AY105024.1 programmed cell death protein 5 - 3e-5 At1g29850 double-stranded DNA-binding family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 6e-4 46 Arabidopsis thaliana At5g59890 836111 ADF4 (ACTIN DEPOLYMERIZING FACTOR 4) actin depolymerizing factor 4 (ADF4) mRNA, complete cds - - - C.G. S.X.
0.03 1e-5 52 Glycine max GmaAffx.89805.1.S1_at CK606473 Homeodomain-leucine zipper protein 56 (Hdl56) - 2e-1 At5g39720 AIG2L (AVIRULENCE INDUCED GENE 2 LIKE PROTEIN) C.G. S.X.
0.40 7e-116 416 Hordeum vulgare Contig3877_s_at Contig3877 - - 1e-4 At3g46000 ADF2 (ACTIN DEPOLYMERIZING FACTOR 2) C.G. S.X.
0.36 6e-101 369 Oryza sativa Os.2813.1.S1_at - - - 0 C.G. S.X.
0.09 2e-1 38 Populus trichocarpa Ptp.7.1.S1_at CV280655 hypothetical protein - 3e-33 At2g31200 ADF6 (ACTIN DEPOLYMERIZING FACTOR 6) C.G. S.X.
0.31 7e-96 351 Triticum aestivum Ta.1198.1.S1_at BJ272933 - - 1e-8 At5g59890 ADF4 (ACTIN DEPOLYMERIZING FACTOR 4) C.G. S.X.
0.08 2e-4 46 Vitis vinifera 1621969_s_at CB349073 hypothetical protein LOC100263646 - 3e-45 At5g59890 ADF4 (ACTIN DEPOLYMERIZING FACTOR 4) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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