Gene omics information

Query gene ID	Zm.705.1.S1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.71	88.2	Zm.705.1.S1_at	BG842406	-	-	4e-2	At1g04445	zinc finger (C2H2 type) family protein	S.X.	H.G.	Please select
0.71	88.2	Zm.12634.1.A1_at	CF048221	hypothetical protein LOC100194224 /// 60S ribosomal protein L23 /// 60S ribosomal protein L23	-	1e-56	At1g04480	60S ribosomal protein L23 (RPL23A)	S.X.	H.G.	Please select
0.67	85.8	Zm.16244.1.S1_a_at	BM080212	-	-	6e+0	At5g06770	KH domain-containing protein / zinc finger (CCCH type) family protein	S.X.	H.G.	Please select
0.59	76.1	Zm.15400.1.S1_at	AF417483.1	origin recognition complex subunit 3	-	9e-2	At5g16690	ORC3 (ORIGIN RECOGNITION COMPLEX SUBUNIT 3)	S.X.	H.G.	Please select
0.48	61.3	Zm.6083.1.A1_at	CF629354	Hypothetical protein LOC100216609	-	1e-61	At5g08300	succinyl-CoA ligase (GDP-forming) alpha-chain, mitochondrial, putative / succinyl-CoA synthetase, alpha chain, putative / SCS-alpha, putative	S.X.	H.G.	Please select
0.36	41.3	Zm.14176.2.S1_at	BI430937	-	-	2e-32	At1g76810	eukaryotic translation initiation factor 2 family protein / eIF-2 family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
11.7	98.6	GSM320438	protocol: mRNA - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.9	98.5	GSM320439	protocol: mRNA - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.3	98.4	GSM320444	protocol: mRNA - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.4	98.3	GSM320443	protocol: mRNA - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.4	98.1	GSM320441	protocol: mRNA - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.0	98.0	GSM320442	protocol: mRNA - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.9	97.9	GSM320445	protocol: mRNA - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.8	97.9	GSM320440	protocol: mRNA - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.8	97.2	GSM320446	protocol: mRNA - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.3	96.9	GSM202406	Zmet2 study 11-day seedling aerial tissue genotype Mo17 Rep2	GSE8188	Expression profiling of zmet2-m1 mutants relative to wild-type

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	4e-3	42	Zm.9846.1.A1_at	BM340911	-	-	8e-2	At1g04445	zinc finger (C2H2 type) family protein	C.G.	S.X.	Please select
0.02	4e-3	42	Zm.6990.1.S1_at	AY105684.1	nuclear transcription factor Y subunit C-2	-	9e-9	At1g56170	NF-YC2 (NUCLEAR FACTOR Y, SUBUNIT C2)	C.G.	S.X.	Please select
0.02	4e-3	42	Zm.2477.1.A1_at	BM347825	hypothetical protein LOC100191278	-	3e-9	At5g15120	unknown protein	C.G.	S.X.	Please select
0.02	2e-2	40	Zm.235.1.S1_at	AJ011614.1	SBP-domain protein1	-	1e-5	At2g33810	SPL3 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 3)	C.G.	S.X.	Please select
0.01	2e-2	40	Zm.237.1.S1_at	AJ011616.1	SBP-domain protein3	-	2e-8	At1g02065	SPL8 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 8)	C.G.	S.X.	Please select
0.02	2e-2	40	Zm.14039.3.S1_a_at	AF113521.1	plasminogen activator inhibitor 1 RNA-binding protein	-	2e-3	At4g16830	nuclear RNA-binding protein (RGGA)	C.G.	S.X.	Please select
0.02	2e-2	40	Zm.14039.3.A1_at	AF113521.1	-	-	2e-3	At4g16830	nuclear RNA-binding protein (RGGA)	C.G.	S.X.	Please select
0.02	2e-2	40	Zm.10485.1.S1_at	BQ528490	hypothetical protein LOC100193633	-	6e+0	At3g03150	unknown protein	C.G.	S.X.	Please select
0.02	7e-2	38	Zm.4627.2.A1_at	BM333588	transcription factor BTF3	-	6e-10	At1g17880	nascent polypeptide-associated complex (NAC) domain-containing protein / BTF3b-like transcription factor, putative	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	4e-2	40	Arabidopsis thaliana	At1g04445	839514	zinc finger (C2H2 type) family protein	F:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:intracellular;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	6e-2	40	Glycine max	PsAffx.CL2043Contig1_at	PsAffx.CL2043Contig1	-	-	8e-1	At1g63310	-	C.G.	S.X.	Please select
0.46	2e-172	605	Hordeum vulgare	Contig12958_at	Contig12958	-	-	8e+0	At5g50030	invertase/pectin methylesterase inhibitor family protein	C.G.	S.X.	Please select
0.43	7e-172	605	Oryza sativa	Os11g0595200	AK106159.1	-	PAP fibrillin family protein	4e-2	At3g23400	plastid-lipid associated protein PAP / fibrillin family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	2e-1	38	Populus trichocarpa	PtpAffx.218717.1.S1_at	pmrna34439	-	-	7e-1	At4g00810	60S acidic ribosomal protein P1 (RPP1B)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.28	7e-78	291	Triticum aestivum	TaAffx.39351.1.A1_at	BG908483	harpin binding protein 1	-	1e+1	At5g50660	unknown protein	C.G.	S.X.	Please select
0.03	1e-2	40	Vitis vinifera	1608947_at	CF609927	hypothetical protein LOC100244812	-	7e-8	At5g04200	AtMC9 (metacaspase 9)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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