Gene omics information

Query gene ID	Zm.6995.2.A1_at
Gene name	prefoldin subunit 3
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.56	74.4	Zm.6995.2.A1_at	BG873820	prefoldin subunit 3	-	7e-3	At5g49510	PDF3 (PREFOLDIN 3)	S.X.	H.G.	Please select
0.77	92.1	Zm.2853.1.A1_at	AY106605.1	hypothetical protein LOC100274141	-	1e-3	At4g29080	PAP2 (PHYTOCHROME-ASSOCIATED PROTEIN 2)	S.X.	H.G.	Please select
0.71	88.2	Zm.12893.1.A1_at	CA401197	-	-	2e+1	At5g07040	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please select
0.71	88.2	Zm.14129.1.A1_a_at	AY104662.1	40S ribosomal protein S24	-	1e-22	At3g04920	40S ribosomal protein S24 (RPS24A)	S.X.	H.G.	Please select
0.55	71.6	Zm.9135.2.A1_at	BM347885	versicolorin reductase	-	4e-1	At5g59990	-	S.X.	H.G.	Please select
0.55	71.6	Zm.12269.2.A1_at	AW256119	Hypothetical protein LOC100193070	-	2e-4	At3g14130	(S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative	S.X.	H.G.	Please select
0.40	48.5	Zm.17291.1.A1_at	CF637748	Zn-dependent hydrolases, including glyoxylases	-	2e-5	At4g33540	metallo-beta-lactamase family protein	S.X.	H.G.	Please select
0.32	33.4	Zm.13729.1.S1_at	AY106251.1	anti-silencing protein 1	-	1e-20	At5g38110	ASF1B (ANTI- SILENCING FUNCTION 1B)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
4.1	95.9	GSM290554	WS2 with array type maize from Affymetrix	GSE11531	Downregulation of cinnamoyl-coenzyme A reductase in maize (affy_ccr_maize)
4.0	95.8	GSM290553	WS1 with array type maize from Affymetrix	GSE11531	Downregulation of cinnamoyl-coenzyme A reductase in maize (affy_ccr_maize)
3.9	95.7	GSM202295	Mo17xB73 immature ear tissue, biological replicate 1	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
3.7	95.4	GSM202292	B73 immature ear tissue, biological replicate 1	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
3.7	95.4	GSM290555	CCR mutant M1 with array type maize from Affymetrix	GSE11531	Downregulation of cinnamoyl-coenzyme A reductase in maize (affy_ccr_maize)
3.6	95.2	GSM202302	B73xMo17 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
3.6	95.2	GSM202306	Mo17xB73 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
3.5	95.1	GSM202298	B73 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
3.5	95.1	GSM206312	Upper pulvinus 2 min total RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
3.5	95.1	GSM202304	B73 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.87	0	1439	Zm.6995.2.A1_a_at	BG873820	prefoldin subunit 3 /// prefoldin subunit 3	-	7e-3	At5g49510	PDF3 (PREFOLDIN 3)	C.G.	S.X.	Please select
0.50	0	718	Zm.6995.1.A1_at	BM336044	prefoldin subunit 3	-	6e-10	At5g49510	PDF3 (PREFOLDIN 3)	C.G.	S.X.	Please select
0.02	2e-1	36	Zm.12892.1.S1_at	CO519322	hypothetical protein LOC100273694	-	3e-9	At4g27920	unknown protein	C.G.	S.X.	Please select
0.02	2e-1	36	Zm.12315.1.S1_at	BM380411	hypothetical protein LOC100273048	-	2e-7	At1g01360	unknown protein	C.G.	S.X.	Please select
0.02	7e-1	34	Zm.9768.1.A1_at	BM338514	hypothetical protein LOC100273687	-	3e-2	At1g29730	ATP binding / kinase/ protein binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase	C.G.	S.X.	Please select
0.02	7e-1	34	Zm.10814.1.A1_at	CF051676	hypothetical protein LOC100280349	-	1e-1	At2g36420	unknown protein	C.G.	S.X.	Please select
0.02	3e+0	32	Zm.8910.1.A1_at	CF646418	protein binding protein	-	2e+0	At5g52130	unknown protein	C.G.	S.X.	Please select
0.01	3e+0	32	Zm.588.1.S1_at	AF142322.1	yin-yang1	-	2e-7	At4g06634	zinc finger (C2H2 type) family protein	C.G.	S.X.	Please select
0.02	3e+0	32	Zm.4823.1.A1_at	CD999070	-	-	4e-23	At1g76550	pyrophosphate--fructose-6-phosphate 1-phosphotransferase alpha subunit, putative / pyrophosphate-dependent 6-phosphofructose-1-kinase, putative	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.18	7e-3	42	Arabidopsis thaliana	At5g49510	835011	PDF3 (PREFOLDIN 3)	F:unfolded protein binding;P:protein folding;C:prefoldin complex;MFOP	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.20	2e-4	48	Glycine max	GmaAffx.65660.1.S1_at	BG237386	-	-	9e-64	At5g49510	PDF3 (PREFOLDIN 3)	C.G.	S.X.	Please select
0.45	4e-117	420	Hordeum vulgare	Contig9935_at	Contig9935	-	-	2e+0	At5g49510	PDF3 (PREFOLDIN 3)	C.G.	S.X.	Please select
0.47	2e-158	559	Oryza sativa	Os12g0562900	AK100001.1	-	-	3e-1	At2g44620	MTACP-1 (MITOCHONDRIAL ACYL CARRIER PROTEIN 1)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.13	1e-14	81	Populus trichocarpa	Ptp.5729.1.S1_at	DN488104	hypothetical protein	-	2e-34	At5g49510	PDF3 (PREFOLDIN 3)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.47	1e-130	466	Triticum aestivum	Ta.14538.1.S1_at	BJ318592	-	-	2e-12	At5g49510	PDF3 (PREFOLDIN 3)	C.G.	S.X.	Please select
0.02	8e+0	30	Vitis vinifera	1621664_x_at	AY427084.1	-	-	2e-1	At4g10780	disease resistance protein (CC-NBS-LRR class), putative	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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