Gene omics information

Query gene ID	Zm.6977.5.A1_at
Gene name	Sucrose synthase
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.0	Zm.6977.5.A1_at	AI881652	Sucrose synthase	-	1e-11	At5g20830	SUS1 (SUCROSE SYNTHASE 1)	S.X.	H.G.	Please select
0.67	85.8	Zm.18525.1.A1_at	CO530497	-	-	1e-4	At5g28150	unknown protein	S.X.	H.G.	Please select
0.60	77.8	Zm.13523.1.A1_at	AY108425.1	-	-	6e-1	At5g59470	PQ-loop repeat family protein / transmembrane family protein	S.X.	H.G.	Please select
0.60	77.8	Zm.19299.1.A1_at	BM074654	-	-	4e-3	At4g09270	unknown protein	S.X.	H.G.	Please select
0.56	74.4	Zm.13494.1.A1_at	AY108782.1	-	-	4e-1	At2g17300	unknown protein	S.X.	H.G.	Please select
0.42	51.3	ZmAffx.1.1.S1_s_at	AY722707.1	hypothetical LOC542518	-	5e-51	At1g57870	ATSK42 (ARABIDOPSIS SHAGGY-LIKE KINASE 42)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
31.2	99.8	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
29.7	99.8	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
29.7	99.8	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
25.6	99.6	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
24.0	99.5	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
23.3	99.5	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
21.2	99.4	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.8	99.1	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.0	99.0	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.5	97.5	GSM320458	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	807	Zm.6977.5.S1_a_at	AI881652	sucrose synthase	-	1e-11	At5g20830	SUS1 (SUCROSE SYNTHASE 1)	C.G.	S.X.	Please select
0.24	0	775	Zm.6977.1.S1_at	X02400.1	sucrose synthase	-	8e-27	At5g20830	SUS1 (SUCROSE SYNTHASE 1)	C.G.	S.X.	Please select
0.06	7e-21	99	Zm.3550.1.A1_at	CF624216	sucrose synthase1	-	8e-12	At3g43190	SUS4	C.G.	S.X.	Please select
0.02	9e-2	36	Zm.14353.1.A1_at	CA399617	-	-	2e-4	At5g57110	ACA8 (AUTOINHIBITED CA2+ -ATPASE, ISOFORM 8)	C.G.	S.X.	Please select
0.02	3e-1	34	Zm.6677.1.A1_at	CO518319	AT-hook protein 1	-	8e-3	At4g12080	DNA-binding family protein	C.G.	S.X.	Please select
0.02	3e-1	34	Zm.15885.1.S1_at	U04434.1	flavanone 3-hydroxylase1	-	2e-10	At3g51240	F3H (FLAVANONE 3-HYDROXYLASE)	C.G.	S.X.	Please select
0.02	1e+0	32	Zm.7116.1.A1_at	BI142341	beta-expansin 4	-	7e-1	At1g65680	ATEXPB2 (ARABIDOPSIS THALIANA EXPANSIN B2)	C.G.	S.X.	Please select
0.01	1e+0	32	Zm.6383.1.A1_at	CA404554	-	-	1e-2	At5g37350	RIO1 family protein	C.G.	S.X.	Please select
0.01	1e+0	32	Zm.6156.2.S1_at	CF627040	-	-	4e-3	At1g72960	root hair defective 3 GTP-binding (RHD3) family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	1e-11	69	Arabidopsis thaliana	At5g20830	832206	SUS1 (SUCROSE SYNTHASE 1)	Encodes a protein with sucrose synthase activity (SUS1).	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	1e+0	34	Glycine max	HgAffx.21196.1.S1_at	BI748557	-	-	8e-1	At1g17520	DNA-binding protein, putative	C.G.	S.X.	Please select
0.60	2e-120	430	Hordeum vulgare	Contig361_s_at	Contig361	-	-	9e-8	At5g20830	SUS1 (SUCROSE SYNTHASE 1)	C.G.	S.X.	Please select
0.19	2e-110	398	Oryza sativa	Os06g0194900	AK119193.1	-	Sucrose synthase 1 (EC 2.4.1.13) (Sucrose-UDPglucosyltransferase 1)	3e-60	At5g20830	SUS1 (SUCROSE SYNTHASE 1)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.06	4e+0	32	Populus trichocarpa	PtpAffx.157995.1.A1_at	DN491349	hypothetical protein	-	1e+0	At1g11320	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.18	7e-100	363	Triticum aestivum	Ta.92.1.S1_s_at	CD869165	sucrose synthase type I	-	1e-22	At3g43190	SUS4	C.G.	S.X.	Please select
0.04	6e-2	36	Vitis vinifera	1615390_at	BQ792520	starch synthase V	-	4e-3	At5g65685	soluble glycogen synthase-related	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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