Gene omics information

Query gene ID	Zm.6973.1.A1_at
Gene name	Hypothetical protein LOC100216936
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.33	36.0	Zm.6973.1.A1_at	AY109828.1	Hypothetical protein LOC100216936	-	5e-1	At4g28830	methyltransferase/ nucleic acid binding	S.X.	H.G.	Please select
0.80	94.0	ZmAffx.936.1.S1_at	AI677620	-	-	3e+0	At3g10490	anac052 (Arabidopsis NAC domain containing protein 52)	S.X.	H.G.	Please select
0.80	94.0	Zm.17521.1.S1_at	CK370540	complex 1 protein containing protein	-	2e+0	At4g39340	unknown protein	S.X.	H.G.	Please select
0.73	89.9	Zm.14476.2.A1_at	AY109949.1	Protein disulfide isomerase	-	1e-5	At3g54960	ATPDIL1-3 (PDI-LIKE 1-3)	S.X.	H.G.	Please select
0.71	88.2	Zm.13679.1.A1_at	AW424469	chemocyanin	-	9e-5	At1g72230	plastocyanin-like domain-containing protein	S.X.	H.G.	Please select
0.53	69.1	Zm.5313.2.A1_at	CA398418	60S ribosomal protein L12	-	9e-9	At2g37190	60S ribosomal protein L12 (RPL12A)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
32.3	99.8	GSM202303	Mo17 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
32.2	99.8	GSM202290	Mo17 immature ear tissue, biological replicate 1	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
22.4	99.5	GSM202297	Mo17 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
19.0	99.2	GSM202299	Mo17xB73 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
15.4	99.0	GSM202302	B73xMo17 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
14.8	98.9	GSM202306	Mo17xB73 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
14.1	98.8	GSM202307	B73xMo17 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
12.1	98.6	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.0	98.5	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.9	98.5	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.60	0	1182	Zm.6973.1.S1_at	AY109828.1	hypothetical protein AY109828	-	5e-1	At4g28830	methyltransferase/ nucleic acid binding	C.G.	S.X.	Please select
0.41	1e-89	329	Zm.6403.1.A1_s_at	AI691706	Hypothetical protein LOC100216936	-	3e+0	At1g23480	ATCSLA03 (CELLULOSE SYNTHASE-LIKE A3)	C.G.	S.X.	Please select
0.41	1e-89	329	Zm.6403.1.A1_at	AI691706	Hypothetical protein LOC100216936	-	3e+0	At1g23480	ATCSLA03 (CELLULOSE SYNTHASE-LIKE A3)	C.G.	S.X.	Please select
0.09	7e-17	87	Zm.9560.1.A1_at	BM382073	m17 protein	-	3e-2	At1g77080	-	C.G.	S.X.	Please select
0.04	2e-8	59	Zm.524.1.S1_at	AF112149.1	MADS box protein 2	-	6e-17	At3g57230	AGL16 (AGAMOUS-LIKE 16)	C.G.	S.X.	Please select
0.06	6e-8	57	Zm.14827.1.S1_at	AJ430635.1	m21 protein	-	1e-1	At1g28200	FIP1 (FH INTERACTING PROTEIN 1)	C.G.	S.X.	Please select
0.06	6e-8	57	Zm.14827.1.A1_at	AJ430635.1	m21 protein	-	1e-1	At1g28200	FIP1 (FH INTERACTING PROTEIN 1)	C.G.	S.X.	Please select
0.03	4e-3	42	Zm.13833.1.A1_at	CF649598	Zea mays MADS6 /// Zea mays MADS7	-	4e-5	At3g61120	AGL13 (AGAMOUS-LIKE 13)	C.G.	S.X.	Please select
0.03	1e-2	40	Zm.293.1.S1_at	L46398.1	MADS box protein	-	3e-3	At3g61120	AGL13 (AGAMOUS-LIKE 13)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	5e-1	36	Arabidopsis thaliana	At4g28830	829004	methyltransferase/ nucleic acid binding	F:methyltransferase activity, nucleic acid binding;P:methylation;C:cellular_component unknown;BOAMPF	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	2e-1	38	Glycine max	GmaAffx.12946.1.S1_at	AW508242	-	-	7e-5	At5g60480	AtHB26 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 26)	C.G.	S.X.	Please select
0.40	5e-138	490	Hordeum vulgare	Contig13064_at	Contig13064	-	-	3e-2	At4g14723	-	C.G.	S.X.	Please select
0.51	5e-123	442	Oryza sativa	Os01g0726400	AY177699.1	-	Transcription factor, MADS-box domain containingprotein	4e-4	At5g10140	FLC (FLOWERING LOCUS C)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	4e-2	40	Populus trichocarpa	PtpAffx.212128.1.S1_x_at	pmrna23787	hypothetical protein	-	1e-1	At2g39445	-	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.36	4e-128	458	Triticum aestivum	Ta.6411.1.S1_at	BJ311449	MADS-box transcription factor TaAGL14	-	4e-2	At4g14723	-	C.G.	S.X.	Please select
0.03	4e-2	38	Vitis vinifera	1614969_at	CA810356	hypothetical protein LOC100252305	-	3e+0	At4g00390	transcription regulator	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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