Gene omics information

Query gene ID	Zm.6933.1.A1_at
Gene name	hypothetical protein LOC100274350
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.83	95.6	Zm.6933.1.A1_at	BI679493	hypothetical protein LOC100274350	-	3e+0	At1g33280	ANAC015 (Arabidopsis NAC domain containing protein 15)	S.X.	H.G.	Please select
0.50	65.7	Zm.3077.2.S1_x_at	CF061929	calmodulin	-	4e-97	At3g43810	CAM7 (CALMODULIN 7)	S.X.	H.G.	Please select
0.43	52.8	Zm.17472.1.S1_at	CK368086	-	-	6e+0	At5g05050	peptidase C1A papain family protein	S.X.	H.G.	Please select
0.40	48.5	Zm.765.1.A1_at	BG354184	hypothetical protein LOC100274097	-	3e+0	At1g70400	-	S.X.	H.G.	Please select
0.35	38.9	Zm.17860.1.S1_at	CF633746	hypothetical protein LOC100193614	-	3e-28	At5g07440	GDH2 (GLUTAMATE DEHYDROGENASE 2)	S.X.	H.G.	Please select
0.13	6.8	Zm.3486.2.S1_at	AY111804.1	-	-	3e-1	At5g52545	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
15.9	99.0	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.6	98.7	GSM202298	B73 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
11.3	98.5	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.6	98.4	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.3	98.2	GSM202302	B73xMo17 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
9.3	98.2	GSM202299	Mo17xB73 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
9.2	98.2	GSM202304	B73 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
9.0	98.2	GSM202307	B73xMo17 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
9.0	98.2	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.2	98.0	GSM202306	Mo17xB73 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.42	1e-89	329	Zm.5865.1.A1_at	AI737975	CDT1a protein	-	2e+0	At5g63510	GAMMA CAL1 (GAMMA CARBONIC ANHYDRASE LIKE 1)	C.G.	S.X.	Please select
0.03	5e-6	52	Zm.2680.1.A1_at	AW066838	hypothetical protein LOC100193801	-	4e+0	At4g05497	F-box family protein	C.G.	S.X.	Please select
0.02	2e-5	50	Zm.6771.1.A1_at	CF629244	growth-regulating factor 13-like	-	3e-5	At2g36400	AtGRF3 (GROWTH-REGULATING FACTOR 3)	C.G.	S.X.	Please select
0.03	2e-5	50	Zm.4152.1.A1_at	AI855242	hypothetical protein LOC100277510	-	4e+0	At5g27850	60S ribosomal protein L18 (RPL18C)	C.G.	S.X.	Please select
0.02	2e-5	50	Zm.16699.1.A1_at	CO518694	hypothetical protein LOC100192506	-	2e-16	At1g68100	IAR1 (IAA-ALANINE RESISTANT 1)	C.G.	S.X.	Please select
0.02	7e-5	48	Zm.6192.1.S1_a_at	CK394758	-	-	5e-1	At3g52990	pyruvate kinase, putative	C.G.	S.X.	Please select
0.02	7e-5	48	Zm.6008.1.S1_at	CA401170	hypothetical protein LOC100216743	-	4e-2	At5g56600	PRF3 (PROFILIN 3)	C.G.	S.X.	Please select
0.03	7e-5	48	Zm.4542.1.A1_at	AI734680	-	-	1e+0	At3g44783	unknown protein	C.G.	S.X.	Please select
0.02	7e-5	48	Zm.4446.1.S1_at	AW520005	hypothetical protein LOC100279946	-	1e-7	At4g14340	CKI1 (CASEIN KINASE I)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	3e+0	34	Arabidopsis thaliana	At1g33280	840223	ANAC015 (Arabidopsis NAC domain containing protein 15)	F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	1e-3	46	Glycine max	GmaAffx.89678.1.A1_s_at	CK606714	CDNA for glutamine synthetase (3' region)	-	9e-2	At1g65352	-	C.G.	S.X.	Please select
0.13	2e-27	123	Hordeum vulgare	Contig14552_at	Contig14552	-	-	2e+0	At3g06600	unknown protein	C.G.	S.X.	Please select
0.01	3e-1	38	Oryza sativa	Os01g0683400	AB110983.1	-	Origin recognition complex subunit 4	4e-2	At2g01120	ORC4 (ORIGIN RECOGNITION COMPLEX SUBUNIT 4)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	1e+1	32	Populus trichocarpa	PtpAffx.80599.1.A1_at	BP934096	hypothetical protein	-	2e-15	At2g42070	ATNUDX23 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 23)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.11	5e-17	89	Triticum aestivum	Ta.5465.1.A1_at	BJ228707	-	-	1e+0	At3g06600	unknown protein	C.G.	S.X.	Please select
0.02	8e-1	34	Vitis vinifera	1613485_at	CF206102.1	-	-	3e-84	At1g21640	NADK2	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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