Gene omics information

Query gene ID	Zm.6916.1.S1_at
Gene name	hypothetical protein LOC100273981
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.56	74.4	Zm.6916.1.S1_at	AW067358	hypothetical protein LOC100273981	-	9e-13	At5g66750	CHR1 (CHROMATIN REMODELING 1)	S.X.	H.G.	Please select
0.91	99.0	Zm.6103.3.S1_at	AI668289	-	-	8e-1	At1g21010	unknown protein	S.X.	H.G.	Please select
0.80	94.0	Zm.16462.1.A1_at	AY347711.1	Xaa-His dipeptidase; X-His dipeptidase; beta-alanyl-histidine dipeptidase	-	7e+0	At5g57685	AtGDU3 (Arabidopsis thaliana GLUTAMINE DUMPER 3)	S.X.	H.G.	Please select
0.77	92.1	Zm.6915.1.S1_at	AW256266	hypothetical protein LOC100280116	-	5e-1	At5g64160	unknown protein	S.X.	H.G.	Please select
0.63	81.1	Zm.12244.1.A1_at	AY105130.1	-	-	4e-8	At2g37500	arginine biosynthesis protein ArgJ family	S.X.	H.G.	Please select
0.47	59.9	Zm.3743.2.S1_at	AY109746.1	-	-	2e+0	At5g04045	Expressed protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
11.3	98.5	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.4	98.3	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.6	98.1	GSM202310	B73 19 day after pollination embryo tissue, biological replicate 1	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
8.5	98.1	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.9	97.7	GSM202299	Mo17xB73 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
6.4	97.5	GSM202322	B73x Mo17 19 day after pollination embryo tissue, biological replicate 3	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
6.2	97.4	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.2	97.4	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.9	97.3	GSM202298	B73 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
5.6	97.1	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.35	3e-106	385	Zm.10239.1.S1_at	AF461813.1	chromatin complex subunit A101	-	5e-25	At5g66750	CHR1 (CHROMATIN REMODELING 1)	C.G.	S.X.	Please select
0.14	1e-16	87	Zm.15907.1.A1_at	AI691196	-	-	3e-1	At5g56540	AGP14 (ARABINOGALACTAN PROTEIN 14)	C.G.	S.X.	Please select
0.01	9e-2	38	Zm.13690.1.A1_at	AY106813.1	-	-	2e-14	At5g19310	homeotic gene regulator, putative	C.G.	S.X.	Please select
0.01	1e+0	34	Zm.6370.1.A1_at	BG266097	-	-	2e+0	At3g47300	SELT (SELT-LIKE PROTEIN PRECURSOR)	C.G.	S.X.	Please select
0.01	1e+0	34	Zm.6312.1.A1_at	CF043412	-	-	1e+0	At3g20557	unknown protein	C.G.	S.X.	Please select
0.01	1e+0	34	Zm.3782.1.S1_at	AW066955	vacuolar protein sorting 26	-	1e-48	At4g27690	VPS26B (VACUOLAR PROTEIN SORTING 26B)	C.G.	S.X.	Please select
0.01	1e+0	34	Zm.11689.1.S1_at	BM379946	hypothetical protein LOC100279725	-	3e+0	At4g34590	GBF6 (G-BOX BINDING FACTOR 6)	C.G.	S.X.	Please select
0.02	6e+0	32	ZmAffx.398.1.S1_at	AI676826	-	-	3e+0	At4g15150	glycine-rich protein	C.G.	S.X.	Please select
0.02	6e+0	32	ZmAffx.398.1.A1_at	AI676826	-	-	3e+0	At4g15150	glycine-rich protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.10	9e-13	75	Arabidopsis thaliana	At5g66750	836808	CHR1 (CHROMATIN REMODELING 1)	Protein is similar to SWI2/SNF2 chromatin remodeling proteins. DDM1 is appears to act as a chromatin-remodeling ATPase involved in cytosine methylation in CG and non-CG contexts. Involved in gene silencing and maintenance of DNA methylation and histone methylation. Hypomethylation of many genomic regions occurs in ddm1 mutants, and can cause several phenotypic abnormalities, but some loci, such as BONSAI (At1g73177) can be hypermethylated in ddm1 mutants after several generations, leading to different phenotypes. DDM1 might be involved in establishing a heterochromain boundary. A line expressing an RNAi targeted against DDM1 shows some resistance to agrobacterium-mediated root transformation.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	2e-11	71	Glycine max	GmaAffx.45461.1.S1_at	BE659709	-	-	2e-27	At5g66750	CHR1 (CHROMATIN REMODELING 1)	C.G.	S.X.	Please select
0.49	4e-112	404	Hordeum vulgare	Contig8894_at	Contig8894	-	-	3e-6	At5g66750	CHR1 (CHROMATIN REMODELING 1)	C.G.	S.X.	Please select
0.07	1e-28	129	Oryza sativa	Os03g0722700	AK060978.1	-	Hypothetical protein	3e+0	At1g70895	CLE17 (CLAVATA3/ESR-RELATED 17)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.12	2e-24	115	Populus trichocarpa	PtpAffx.212466.1.S1_at	pmrna24426	chromatin remodeling complex subunit	-	2e-32	At5g66750	CHR1 (CHROMATIN REMODELING 1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.48	8e-106	385	Triticum aestivum	Ta.23819.2.S1_x_at	CK208180	-	-	4e-6	At5g66750	CHR1 (CHROMATIN REMODELING 1)	C.G.	S.X.	Please select
0.01	1e+0	34	Vitis vinifera	1616916_a_at	CB346827	hypothetical protein LOC100251636	-	7e-27	At5g02450	60S ribosomal protein L36 (RPL36C)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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