CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Zm.6905.1.A1_a_at

Gene name histone1a

Organism Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.71 88.2 Zm.6905.1.A1_a_at AF461814.1 histone1a - 6e-1 At4g04620 ATG8B (autophagy 8b) S.X. H.G.
0.73 89.9 Zm.6984.8.A1_a_at AI770763 Hypothetical protein LOC100193571 - 4e+0 At5g28615 - S.X. H.G.
0.67 85.8 Zm.6116.1.A1_at CK347339 - - 9e-16 At3g02320 RNA binding / tRNA (guanine-N2-)-methyltransferase S.X. H.G.
0.60 77.8 Zm.3573.1.A1_at CF629925 peroxidase 54 - 3e-3 At5g06720 peroxidase, putative S.X. H.G.
0.42 51.3 RPTR-Zm-M57289-1_s_at RPTR-Zm-M57289-1 - - 0 S.X. H.G.
0.30 29.8 Zm.16537.1.S1_at AY103617.1 40S ribosomal protein SA - 4e-70 At1g72370 P40 S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
3.5 95.1 GSM206306 Lower pulvinus 2 min polysomal RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
3.5 95.1 GSM206289 Upper pulvinus 5 min total RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
3.4 94.9 GSM206295 Lower pulvinus 5 min total RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
3.3 94.7 GSM202295 Mo17xB73 immature ear tissue, biological replicate 1 GSE8176 Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
3.1 94.3 GSM202306 Mo17xB73 immature ear tissue, biological replicate 3 GSE8176 Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
3.1 94.3 GSM206299 Left pulvinus control polysomal RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
3.0 94.0 GSM202296 B73xMo17 immature ear tissue, biological replicate 1 GSE8176 Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
2.9 93.8 GSM206293 Right pulvinus control total RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
2.8 93.5 GSM206294 Lower pulvinus 2 min total RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
2.8 93.5 GSM206305 Right pulvinus control polysomal RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.73 0 1320 Zm.6905.3.S1_at CD444092 Histone H1-like protein - 3e-1 At4g04620 ATG8B (autophagy 8b) C.G. S.X.
0.73 0 1320 Zm.6905.3.A1_a_at CD444092 histone1a /// histone H1-like protein - 3e-1 At4g04620 ATG8B (autophagy 8b) C.G. S.X.
0.33 2e-143 508 Zm.6905.4.S1_a_at AI881845 Histone H1-like protein - 2e-1 At1g07980 NF-YC10 (NUCLEAR FACTOR Y, SUBUNIT C10) C.G. S.X.
0.33 2e-143 508 Zm.6905.4.A1_at AI881845 Histone H1-like protein - 2e-1 At1g07980 NF-YC10 (NUCLEAR FACTOR Y, SUBUNIT C10) C.G. S.X.
0.33 2e-143 508 Zm.6905.4.S1_at AI881845 Histone H1-like protein - 2e-1 At1g07980 NF-YC10 (NUCLEAR FACTOR Y, SUBUNIT C10) C.G. S.X.
0.12 3e-10 65 Zm.6393.1.A1_x_at BM267711 H1 histone - 6e-1 At1g71290 F-box family protein-related C.G. S.X.
0.12 3e-10 65 Zm.6393.2.S1_x_at X57077.1 H1 histone - 6e-1 At1g71290 F-box family protein-related C.G. S.X.
0.14 3e-10 65 Zm.15984.1.A1_at CD441218 - - 2e+0 At3g58370 K-Cl Co-transporter type 1 protein-related / KCC1 protein-related C.G. S.X.
0.09 4e-9 61 Zm.7030.1.S1_at CA404945 - - 3e+0 At3g22425 IGPD C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 6e-1 36 Arabidopsis thaliana At4g04620 825794 ATG8B (autophagy 8b) F:microtubule binding;P:autophagy;C:unknown;MOPFV - - - C.G. S.X.
0.03 2e-4 48 Glycine max GmaAffx.77802.1.S1_at BI968400 - - 1e-3 At3g49940 LBD38 (LOB DOMAIN-CONTAINING PROTEIN 38) C.G. S.X.
0.17 3e-4 46 Hordeum vulgare Contig1776_s_at Contig1776 - - 3e+0 At1g69180 CRC (CRABS CLAW) C.G. S.X.
0.15 3e-7 57 Oryza sativa Os07g0184800 AK059544.1 - Histone-like protein 1e-1 At2g46090 diacylglycerol kinase family protein C.G. S.X.
0.03 8e-1 36 Populus trichocarpa PtpAffx.249.280.S1_a_at CK094419 hypothetical protein - 5e-9 At1g55510 BCDH BETA1 (BRANCHED-CHAIN ALPHA-KETO ACID DECARBOXYLASE E1 BETA SUBUNIT) C.G. S.X.
0.55 0 737 Triticum aestivum Ta.17986.1.S1_at CA627009 - - 6e-2 At4g20260 DREPP plasma membrane polypeptide family protein C.G. S.X.
0.03 2e-4 46 Vitis vinifera 1612905_s_at CB345326 hypothetical protein LOC100258381 - 5e-3 At1g12830 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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