Gene omics information

Query gene ID	Zm.6904.1.S1_at
Gene name	hypothetical protein LOC100273500
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.48	61.3	Zm.6904.1.S1_at	AY106446.1	hypothetical protein LOC100273500	-	6e-24	At5g37020	ARF8 (AUXIN RESPONSE FACTOR 8)	S.X.	H.G.	Please select
0.57	75.1	Zm.7611.2.A1_at	BM268818	-	-	2e-3	At1g49400	emb1129 (embryo defective 1129)	S.X.	H.G.	Please select
0.44	55.7	Zm.19300.1.S1_at	CO522732	DNA repair protein RAD51	-	3e+0	At2g45280	ATRAD51C	S.X.	H.G.	Please select
0.40	48.5	Zm.13871.1.A1_at	AF099434.1	R2R3MYB-domain protein	-	2e-5	At1g08810	MYB60 (myb domain protein 60)	S.X.	H.G.	Please select
0.27	24.6	Zm.15852.2.A1_at	AY108720.1	-	-	1e-41	At5g03430	phosphoadenosine phosphosulfate (PAPS) reductase family protein	S.X.	H.G.	Please select
0.24	19.8	Zm.14272.2.A1_at	D10622.1	corn cystatin I	-	6e-7	At5g05110	cysteine protease inhibitor, putative / cystatin, putative	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
10.3	98.4	GSM202298	B73 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
9.6	98.3	GSM202295	Mo17xB73 immature ear tissue, biological replicate 1	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
9.2	98.2	GSM202292	B73 immature ear tissue, biological replicate 1	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
8.7	98.1	GSM202304	B73 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
8.0	98.0	GSM202307	B73xMo17 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
7.9	97.9	GSM202306	Mo17xB73 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
7.7	97.9	GSM202302	B73xMo17 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
7.4	97.8	GSM202303	Mo17 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
7.0	97.7	GSM202299	Mo17xB73 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
6.9	97.7	GSM202297	Mo17 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	6e-13	75	Zm.4646.1.A1_at	BM380900	-	-	3e-14	At1g30330	ARF6 (AUXIN RESPONSE FACTOR 6)	C.G.	S.X.	Please select
0.06	1e-10	67	Zm.4972.1.A1_at	CA404994	hypothetical protein LOC100279854	-	1e-25	At1g30330	ARF6 (AUXIN RESPONSE FACTOR 6)	C.G.	S.X.	Please select
0.05	3e-8	59	Zm.8402.1.A1_at	BM073969	-	-	2e-18	At1g30330	ARF6 (AUXIN RESPONSE FACTOR 6)	C.G.	S.X.	Please select
0.03	3e-8	59	Zm.17643.1.S1_at	CK368600	-	-	2e-1	At5g54850	unknown protein	C.G.	S.X.	Please select
0.01	8e-6	52	Zm.3190.1.A1_at	AW600630	-	-	2e-17	At1g30330	ARF6 (AUXIN RESPONSE FACTOR 6)	C.G.	S.X.	Please select
0.02	1e-4	48	Zm.2903.1.A1_at	CF019919	hypothetical protein LOC100274564	-	9e-8	At5g62000	ARF2 (AUXIN RESPONSE FACTOR 2)	C.G.	S.X.	Please select
0.01	8e-3	42	ZmAffx.866.1.A1_at	AI770731	-	-	2e-1	At5g55850	NOI	C.G.	S.X.	Please select
0.01	8e-3	42	ZmAffx.866.1.S1_at	AI770731	-	-	2e-1	At5g55850	NOI	C.G.	S.X.	Please select
0.01	8e-3	42	ZmAffx.882.1.A1_at	AI770805	-	-	3e+0	At1g18970	GLP4 (GERMIN-LIKE PROTEIN 4)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.13	6e-24	113	Arabidopsis thaliana	At5g37020	833672	ARF8 (AUXIN RESPONSE FACTOR 8)	Encodes a member of the auxin response factor family. Mediates auxin response via expression of auxin regulated genes. Acts redundantly with ARF6 to control stamen elongation and flower maturation. Expression of ARF8 is controlled by miR167.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.08	5e-13	77	Glycine max	Gma.9887.1.S1_at	BU548230	-	-	2e-50	At1g30330	ARF6 (AUXIN RESPONSE FACTOR 6)	C.G.	S.X.	Please select
0.36	1e-153	543	Hordeum vulgare	Contig12845_at	Contig12845	-	-	9e-34	At5g37020	ARF8 (AUXIN RESPONSE FACTOR 8)	C.G.	S.X.	Please select
0.52	1e-153	545	Oryza sativa	Os04g0671900	AK071455.1	-	Auxin response factor 8	3e-45	At1g30330	ARF6 (AUXIN RESPONSE FACTOR 6)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.16	3e-36	155	Populus trichocarpa	PtpAffx.221563.1.S1_at	pmrna38507	hypothetical protein	-	1e-99	At5g37020	ARF8 (AUXIN RESPONSE FACTOR 8)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.12	1e-25	119	Triticum aestivum	Ta.9550.1.A1_at	BF473273	-	-	2e-9	At5g37020	ARF8 (AUXIN RESPONSE FACTOR 8)	C.G.	S.X.	Please select
0.09	1e-44	180	Vitis vinifera	1612564_at	CF207502	-	-	2e-32	At5g37020	ARF8 (AUXIN RESPONSE FACTOR 8)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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