Gene omics information

Query gene ID	Zm.6872.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.77	92.1	Zm.6872.1.A1_at	AI065521	-	-	2e+0	At1g27920	MAP65-8 (MICROTUBULE-ASSOCIATED PROTEIN 65-8)	S.X.	H.G.	Please select
0.80	94.0	Zm.6394.1.A1_at	BM378641	hypothetical protein LOC100192557	-	3e-2	At1g52150	ATHB-15	S.X.	H.G.	Please select
0.80	94.0	Zm.6381.1.A1_at	CO534945	hypothetical protein LOC100273528	-	2e+0	At2g42610	LSH10 (LIGHT SENSITIVE HYPOCOTYLS 10)	S.X.	H.G.	Please select
0.80	94.0	Zm.1783.1.S1_at	AY109631.1	protein binding protein	-	1e+1	At5g24860	FPF1 (FLOWERING PROMOTING FACTOR 1)	S.X.	H.G.	Please select
0.73	89.9	Zm.6874.2.S1_at	CF637577	-	-	3e-3	At2g45430	DNA-binding protein-related	S.X.	H.G.	Please select
0.67	85.8	Zm.4336.1.S1_at	CA403908	hypothetical protein LOC100274309	-	4e+0	At5g38580	-	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
41.3	99.9	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.4	99.1	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.0	98.4	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.9	98.3	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.7	98.1	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.9	97.9	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.3	96.9	GSM202298	B73 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
4.4	96.2	GSM253279	ZM_8d_SG200_3inf_III	GSE10023	Maize gene expression during infection with Ustilago maydis
3.6	95.2	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.4	94.9	GSM320459	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.19	1e-9	61	ZmAffx.486.1.A1_at	AI691392	-	-	3e+0	At5g14800	P5CR (PYRROLINE-5- CARBOXYLATE (P5C) REDUCTASE)	C.G.	S.X.	Please select
0.09	1e-9	61	Zm.10457.1.A1_a_at	CK348001	cyclin-like F-box	-	1e-7	At2g32560	F-box family protein	C.G.	S.X.	Please select
0.05	4e-6	50	Zm.3165.1.A1_at	CF633794	terpene synthase 7	-	2e+0	At3g61840	unknown protein	C.G.	S.X.	Please select
0.08	1e-3	42	Zm.2447.1.A1_at	BM079996	-	-	2e+0	At3g19140	protein binding / zinc ion binding	C.G.	S.X.	Please select
0.08	1e-3	42	Zm.14571.1.S1_at	CD976279	hypothetical protein LOC100280272	-	4e+0	At5g51910	TCP family transcription factor, putative	C.G.	S.X.	Please select
0.04	4e-3	40	Zm.7341.1.A1_at	BM267652	TFIIB-related protein	-	2e-14	At4g36650	ATPBRP (PLANT-SPECIFIC TFIIB-RELATED PROTEIN)	C.G.	S.X.	Please select
0.08	1e-2	38	Zm.17726.1.A1_at	CK370305	-	-	1e+0	At1g55805	BolA-like family protein	C.G.	S.X.	Please select
0.02	2e-1	34	Zm.6137.2.A1_at	BG837946	-	-	3e-19	At4g36480	ATLCB1 (LONG-CHAIN BASE1)	C.G.	S.X.	Please select
0.02	2e-1	34	Zm.6137.2.S1_at	CF018596	hypothetical protein LOC100274163 /// serine palmitoyltransferase 1	-	3e-19	At4g36480	ATLCB1 (LONG-CHAIN BASE1)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	2e+0	32	Arabidopsis thaliana	At1g27920	839685	MAP65-8 (MICROTUBULE-ASSOCIATED PROTEIN 65-8)	F:molecular_function unknown;P:biological_process unknown;C:microtubule, spindle, phragmoplast;MOPFBA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.06	2e-1	36	Glycine max	Gma.7815.1.A1_s_at	BE211747	-	-	6e+0	At4g16240	unknown protein	C.G.	S.X.	Please select
0.06	3e-1	34	Hordeum vulgare	Contig19567_at	Contig19567	-	-	3e+1	At5g63063	-	C.G.	S.X.	Please select
0.06	3e-1	36	Oryza sativa	OsAffx.27700.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	2e-1	36	Populus trichocarpa	PtpAffx.114411.1.S1_at	CV259702	hypothetical protein	-	4e+0	At3g16900	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.06	1e-1	36	Triticum aestivum	Ta.6243.1.A1_at	CD893894	-	-	7e+0	At4g23930	-	C.G.	S.X.	Please select
0.04	7e-1	32	Vitis vinifera	1614288_at	CF415760	hypothetical protein LOC100251843	-	2e-1	At2g41150	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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