Gene omics information

Query gene ID	Zm.6845.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.50	65.7	Zm.6845.1.A1_at	BG841671	-	-	7e-1	At5g63150	unknown protein	S.X.	H.G.	Please select
0.63	81.1	Zm.8622.1.A1_at	BM075445	CBL-interacting serine/threonine-protein kinase 15	-	9e-1	At5g04250	OTU-like cysteine protease family protein	S.X.	H.G.	Please select
0.60	77.8	Zm.16352.1.A1_at	AY108001.1	-	-	1e+0	At2g32340	-	S.X.	H.G.	Please select
0.55	71.6	Zm.3911.1.A1_at	CA401442	-	-	7e-25	At3g45040	phosphatidate cytidylyltransferase family protein	S.X.	H.G.	Please select
0.53	69.1	Zm.6421.1.A1_at	AI834083	-	-	1e-9	At2g46380	unknown protein	S.X.	H.G.	Please select
0.50	65.7	Zm.13944.6.S1_a_at	AI795502	glycine-rich RNA-binding protein 8	-	9e-10	At3g26420	ATRZ-1A	S.X.	H.G.	Please select
0.50	65.7	Zm.16931.1.A1_s_at	AI714400	hypothetical protein LOC100279421	-	3e-1	At5g46610	unknown protein	S.X.	H.G.	Please select
0.50	65.7	Zm.12718.2.A1_at	AY106773.1	SET domain protein 113	-	6e+0	At5g53742	-	S.X.	H.G.	Please select
0.32	33.4	Zm.9784.1.A1_at	BM351072	-	-	1e+0	At5g50840	-	S.X.	H.G.	Please select
0.26	22.7	Zm.4497.1.A1_at	BM336128	hypothetical protein LOC100193897	-	7e-1	At2g20940	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
14.8	98.9	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.6	98.8	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.4	98.8	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.2	98.8	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.8	98.7	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.7	98.7	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.9	98.5	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.0	98.4	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.3	98.0	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.8	97.6	GSM206325	Upper pulvinus 5 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	3e-1	36	Zm.765.1.A1_at	BG354184	hypothetical protein LOC100274097	-	3e+0	At1g70400	-	C.G.	S.X.	Please select
0.01	3e-1	36	Zm.521.1.S1_at	AF200530.1	cellulose synthase6	-	1e-20	At2g21770	CESA9 (CELLULOSE SYNTHASE A9)	C.G.	S.X.	Please select
0.01	1e+0	34	Zm.12287.1.A1_at	CD568394	glucan endo-1,3-beta-glucosidase 3	-	4e-8	At1g18650	PDCB3 (PLASMODESMATA CALLOSE-BINDING PROTEIN 3)	C.G.	S.X.	Please select
0.02	5e+0	32	ZmAffx.45.1.A1_at	AI664925	amino acid permease	-	8e-1	At5g52160	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	C.G.	S.X.	Please select
0.02	5e+0	32	ZmAffx.45.1.S1_at	AI664925	-	-	8e-1	At5g52160	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	C.G.	S.X.	Please select
0.01	5e+0	32	Zm.4151.1.A1_at	CK145163	hypothetical protein LOC100276753	-	5e-4	At4g31410	unknown protein	C.G.	S.X.	Please select
0.01	5e+0	32	Zm.19269.1.A1_at	CO521789	hypothetical protein LOC100275524	-	3e-1	At1g53120	RNA-binding S4 domain-containing protein	C.G.	S.X.	Please select
0.01	5e+0	32	Zm.18499.1.S1_at	CO533098	hypothetical protein LOC100193919	-	7e-1	At1g01750	ADF11 (ACTIN DEPOLYMERIZING FACTOR 11)	C.G.	S.X.	Please select
0.02	5e+0	32	Zm.14692.1.A1_s_at	BQ539260	hypothetical protein LOC100276042	-	5e+0	At1g09195	-	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	7e-1	36	Arabidopsis thaliana	At5g63150	836436	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	1e+0	36	Glycine max	GmaAffx.470.1.S1_at	BE020087	-	-	3e+0	At5g64980	unknown protein	C.G.	S.X.	Please select
0.20	2e-30	133	Hordeum vulgare	Contig19357_at	Contig19357	-	-	2e+0	At3g14840	leucine-rich repeat family protein / protein kinase family protein	C.G.	S.X.	Please select
0.14	2e-43	178	Oryza sativa	Os01g0864700	AU172991	-	Protein kinase domain containing protein	3e-51	At3g44200	NEK6 ("NIMA (NEVER IN MITOSIS, GENE A)-RELATED 6")	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	4e+0	34	Populus trichocarpa	PtpAffx.88584.1.A1_at	CV260281	-	-	3e+0	Atmg00110	-	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.40	0	650	Triticum aestivum	TaAffx.85563.1.S1_at	CA621691	-	-	3e+0	At5g17560	BolA-like family protein	C.G.	S.X.	Please select
0.02	2e-1	36	Vitis vinifera	1618862_at	CF215158	hypothetical protein LOC100265038	-	1e-3	At5g23540	26S proteasome regulatory subunit, putative	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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