Gene omics information

Query gene ID	Zm.6787.1.A1_a_at
Gene name	hypothetical protein LOC100274407 /// UMP synthase
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.76	91.1	Zm.6787.1.A1_a_at	AF277454.1	hypothetical protein LOC100274407 /// UMP synthase	-	2e-17	At3g54470	uridine 5'-monophosphate synthase / UMP synthase (PYRE-F) (UMPS)	S.X.	H.G.	Please select
0.67	85.8	Zm.17310.1.A1_at	CK368488	-	-	7e+0	At5g42000	ORMDL family protein	S.X.	H.G.	Please select
0.65	82.1	Zm.16834.1.A1_at	AY109979.1	-	-	4e-1	At1g64370	unknown protein	S.X.	H.G.	Please select
0.65	82.1	Zm.7176.1.A1_at	CF629363	-	-	5e+0	At5g05210	nucleolar matrix protein-related	S.X.	H.G.	Please select
0.64	81.7	Zm.2979.1.S1_at	BG841486	trafficking protein particle complex protein 2	-	2e-12	At1g80500	-	S.X.	H.G.	Please select
0.64	81.7	Zm.4867.1.A1_at	CO529638	hypothetical protein LOC100279332	-	6e-6	At1g11860	aminomethyltransferase, putative	S.X.	H.G.	Please select
0.61	79.5	Zm.393.1.S1_at	U41466.1	glossy15	-	3e-7	At5g67180	AP2 domain-containing transcription factor, putative	S.X.	H.G.	Please select
0.56	74.4	Zm.3938.1.A1_at	CB350990	-	-	2e+0	At5g63310	NDPK2 (NUCLEOSIDE DIPHOSPHATE KINASE 2)	S.X.	H.G.	Please select
0.53	69.1	Zm.14470.1.S1_a_at	CA400454	hypothetical protein LOC100279736 /// GTP-binding protein SAR1A	-	2e-19	At1g09180	ATSARA1A (ARABIDOPSIS THALIANA SECRETION-ASSOCIATED RAS SUPER FAMILY 1)	S.X.	H.G.	Please select
0.48	61.3	Zm.16593.4.S1_at	CA401361	hypothetical protein LOC100194160	-	2e-4	At5g51840	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
25.4	99.6	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
23.8	99.5	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.4	99.2	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.6	99.1	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.7	98.7	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.1	97.4	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.0	97.3	GSM202297	Mo17 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
5.9	97.3	GSM202303	Mo17 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
5.3	96.9	GSM205424	Mo17 19 DAP endosperm tissue biological replicate 2	GSE8278	Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
5.3	96.9	GSM202314	Mo17 19 day after pollination embryo tissue, biological replicate 2	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.99	0	3326	Zm.6787.1.A1_at	AF277454.1	UMP synthase	-	2e-17	At3g54470	uridine 5'-monophosphate synthase / UMP synthase (PYRE-F) (UMPS)	C.G.	S.X.	Please select
0.73	0	2097	Zm.6787.2.A1_at	AY104150.1	hypothetical protein LOC100274407	-	5e-15	At3g54470	uridine 5'-monophosphate synthase / UMP synthase (PYRE-F) (UMPS)	C.G.	S.X.	Please select
0.14	2e-9	63	Zm.8656.1.A1_at	BM336261	hypothetical protein LOC100192906	-	4e-2	At5g27440	unknown protein	C.G.	S.X.	Please select
0.05	2e-6	54	Zm.6755.1.A1_a_at	CF629886	nicotiana lesion-inducing like	-	2e+0	At2g12945	unknown protein	C.G.	S.X.	Please select
0.05	2e-6	54	Zm.6755.1.A1_at	CF629886	nicotiana lesion-inducing like	-	2e+0	At2g12945	unknown protein	C.G.	S.X.	Please select
0.05	2e-6	54	Zm.4005.1.A1_at	BE345363	-	-	4e+0	At1g68140	-	C.G.	S.X.	Please select
0.02	2e-6	54	Zm.2748.1.S1_at	BU093107	hypothetical protein LOC100216589	-	2e-3	At1g07840	leucine zipper factor-related	C.G.	S.X.	Please select
0.02	2e-6	54	Zm.14297.1.A1_at	AI737436	-	-	9e-3	At3g13340	WD-40 repeat family protein	C.G.	S.X.	Please select
0.03	6e-6	52	Zm.18908.1.A1_at	CO531963	-	-	2e-9	At5g30490	-	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.19	2e-17	91	Arabidopsis thaliana	At3g54470	824612	uridine 5'-monophosphate synthase / UMP synthase (PYRE-F) (UMPS)	encodes the bi-functional orotate phosphoribosyltransferase/orotidine-5'-phosphate decarboxylase catalyzing the fifth and sixth step in the de novo pyrimidine ribonucleotide biosynthesis	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.26	4e-19	97	Glycine max	Gma.5031.1.S1_at	BI970511	-	-	1e-29	At3g54470	uridine 5'-monophosphate synthase / UMP synthase (PYRE-F) (UMPS)	C.G.	S.X.	Please select
0.62	2e-176	619	Hordeum vulgare	Contig7902_at	Contig7902	-	-	3e-15	At3g54470	uridine 5'-monophosphate synthase / UMP synthase (PYRE-F) (UMPS)	C.G.	S.X.	Please select
0.59	0	706	Oryza sativa	Os01g0951200	AF210324.1	-	Orotidine 5'- phosphate decarboxylase (EC4.1.1.23) (OMPdecase)]	2e-29	At3g54470	uridine 5'-monophosphate synthase / UMP synthase (PYRE-F) (UMPS)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.25	2e-14	81	Populus trichocarpa	PtpAffx.249.331.S1_at	CN549900	hypothetical protein	-	3e-33	At3g54470	uridine 5'-monophosphate synthase / UMP synthase (PYRE-F) (UMPS)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.71	0	1419	Triticum aestivum	Ta.27185.1.S1_at	BT009130.1	-	-	4e-18	At3g54470	uridine 5'-monophosphate synthase / UMP synthase (PYRE-F) (UMPS)	C.G.	S.X.	Please select
0.13	9e-26	117	Vitis vinifera	1620457_at	BQ795397	hypothetical protein LOC100261809	-	3e-33	At3g54470	uridine 5'-monophosphate synthase / UMP synthase (PYRE-F) (UMPS)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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