Gene omics information

Query gene ID	Zm.6754.1.A1_at
Gene name	hypothetical protein LOC100279965
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	85.8	Zm.6754.1.A1_at	AI396158	hypothetical protein LOC100279965	-	4e-2	At4g36530	hydrolase, alpha/beta fold family protein	S.X.	H.G.	Please select
0.60	77.8	Zm.3999.1.S1_at	CF024332	hypothetical protein LOC100276811	-	3e+0	At5g39860	PRE1 (PACLOBUTRAZOL RESISTANCE1)	S.X.	H.G.	Please select
0.44	55.7	Zm.7611.2.A1_at	BM268818	-	-	2e-3	At1g49400	emb1129 (embryo defective 1129)	S.X.	H.G.	Please select
0.42	51.3	Zm.3767.2.A1_at	BM073671	-	-	1e-7	At5g20890	chaperonin, putative	S.X.	H.G.	Please select
0.40	48.5	Zm.6644.2.A1_at	AY109212.1	-	-	4e+0	At5g42050	-	S.X.	H.G.	Please select
0.31	31.6	Zm.2716.1.A1_at	CD440659	-	-	3e+0	At4g28700	AMT1	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
14.8	98.9	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.9	98.7	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.1	98.5	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.3	98.2	GSM253270	ZM_4.5d_Mock_3inf_III	GSE10023	Maize gene expression during infection with Ustilago maydis
9.2	98.2	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.2	97.8	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.5	97.5	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.5	97.5	GSM253269	ZM_4.5d_Mock_3inf_II	GSE10023	Maize gene expression during infection with Ustilago maydis
5.9	97.3	GSM253268	ZM_4.5d_Mock_3inf_I	GSE10023	Maize gene expression during infection with Ustilago maydis
5.3	96.9	GSM320438	protocol: mRNA - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	1e+0	32	Zm.5705.1.S1_at	AI637038	-	-	4e-8	At1g30000	glycoside hydrolase family 47 protein	C.G.	S.X.	Please select
0.03	1e+0	32	Zm.10005.1.A1_at	BM351316	VHS and GAT domain protein	-	2e+0	At1g11270	F-box family protein	C.G.	S.X.	Please select
0.05	5e+0	30	ZmAffx.92.1.A1_at	AI665387	-	-	2e-1	At3g53890	40S ribosomal protein S21 (RPS21B)	C.G.	S.X.	Please select
0.05	5e+0	30	ZmAffx.92.1.S1_at	AI665387	-	-	2e-1	At3g53890	40S ribosomal protein S21 (RPS21B)	C.G.	S.X.	Please select
0.01	5e+0	30	Zm.8993.1.A1_a_at	AI649732	hypothetical protein LOC100194128 /// hypothetical protein LOC100194385	-	2e-27	At5g57655	xylose isomerase family protein	C.G.	S.X.	Please select
0.01	5e+0	30	Zm.8993.1.A1_at	AI649732	hypothetical protein LOC100194128	-	2e-27	At5g57655	xylose isomerase family protein	C.G.	S.X.	Please select
0.01	5e+0	30	Zm.5665.1.A1_at	CF015743	hypothetical protein LOC100277219	-	7e-2	At4g31180	aspartyl-tRNA synthetase, putative / aspartate--tRNA ligase, putative	C.G.	S.X.	Please select
0.03	5e+0	30	Zm.4553.1.S1_at	BE238641	-	-	4e-1	At4g28860	ckl4 (Casein Kinase I-like 4)	C.G.	S.X.	Please select
0.03	5e+0	30	Zm.3204.2.S1_at	CK827539	-	-	6e+0	At1g76360	protein kinase, putative	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	4e-2	38	Arabidopsis thaliana	At4g36530	829805	hydrolase, alpha/beta fold family protein	F:hydrolase activity;P:unknown;C:chloroplast;BOMPFAV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	4e+0	32	Glycine max	GmaAffx.83008.1.S1_at	BQ079640	-	-	1e-21	At1g09620	ATP binding / aminoacyl-tRNA ligase/ leucine-tRNA ligase/ nucleotide binding	C.G.	S.X.	Please select
0.04	5e+0	30	Hordeum vulgare	Contig8550_s_at	Contig8550	-	-	9e-1	At3g48660	unknown protein	C.G.	S.X.	Please select
0.10	3e-17	89	Oryza sativa	Os08g0478100	AK063259.1	-	Protein of unknown function UPF0029 family protein	2e-4	At4g38090	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	4e+0	32	Populus trichocarpa	PtpAffx.222454.1.S1_at	pmrna39862	hypothetical protein	-	8e-1	At3g49307	Expressed protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.10	2e-16	85	Triticum aestivum	TaAffx.83169.1.S1_at	CD872467	-	-	4e-1	At4g38090	unknown protein	C.G.	S.X.	Please select
0.10	8e-1	32	Vitis vinifera	1616528_s_at	CD801342	hypothetical protein LOC100242887	-	2e+0	At2g25710	HCS1 (HOLOCARBOXYLASE SYNTHASE)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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