Gene omics information

Query gene ID	Zm.6721.12.A1_s_at
Gene name	Histone H4
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.61	79.5	Zm.6721.12.A1_s_at	BG265991	Histone H4	-	6e-18	At1g07660	histone H4	S.X.	H.G.	Please select
0.74	90.3	Zm.4190.1.A1_at	BE344878	-	-	9e-31	At4g34350	HDR (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE REDUCTASE)	S.X.	H.G.	Please select
0.73	89.9	Zm.6443.1.A1_at	CA404297	hypothetical protein AY107910	-	4e-25	At2g02560	CAND1 (CULLIN-ASSOCIATED AND NEDDYLATION DISSOCIATED)	S.X.	H.G.	Please select
0.72	88.6	Zm.2601.1.S1_at	U45856.1	cytosolic glyceroldehyde-3-phosphate dehydrogenase GAPC3 /// glyceraldehyde-3-phosphate dehydrogenase	-	3e-139	At3g04120	GAPC1 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C SUBUNIT 1)	S.X.	H.G.	Please select
0.71	88.2	Zm.15961.1.S1_s_at	CK369834	-	-	4e-1	At3g19920	unknown protein	S.X.	H.G.	Please select
0.70	87.0	Zm.5290.1.S1_at	AY104548.1	F-box domain containing protein	-	4e+0	At3g07260	forkhead-associated domain-containing protein / FHA domain-containing protein	S.X.	H.G.	Please select
0.65	82.1	Zm.18743.1.A1_at	CK985678	palmitoyltransferase ZDHHC9	-	6e-17	At5g50020	zinc finger (DHHC type) family protein	S.X.	H.G.	Please select
0.60	77.8	Zm.2376.4.A1_x_at	CK368489	cortical cell-delineating protein	-	6e+0	At3g24510	-	S.X.	H.G.	Please select
0.58	75.1	Zm.14040.1.A1_at	CF051487	C-4 methylsterol oxidase	-	6e-20	At4g22756	SMO1-2 (STEROL C4-METHYL OXIDASE 1-2)	S.X.	H.G.	Please select
0.57	75.1	Zm.3144.1.S1_at	CD441537	nucleic acid binding protein	-	3e+0	At4g20420	tapetum-specific protein-related	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
10.1	98.4	GSM202306	Mo17xB73 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
8.2	98.0	GSM202296	B73xMo17 immature ear tissue, biological replicate 1	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
8.2	98.0	GSM202302	B73xMo17 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
8.0	98.0	GSM202307	B73xMo17 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
7.9	97.9	GSM202292	B73 immature ear tissue, biological replicate 1	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
7.9	97.9	GSM202299	Mo17xB73 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
7.7	97.9	GSM202304	B73 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
7.3	97.8	GSM202298	B73 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
7.3	97.8	GSM202297	Mo17 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
6.9	97.7	GSM202295	Mo17xB73 immature ear tissue, biological replicate 1	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.44	2e-130	464	Zm.6721.5.A1_at	CF634010	Histone H4	-	1e-19	At5g59690	histone H4	C.G.	S.X.	Please select
0.33	2e-126	450	Zm.6721.3.A1_at	CF016153	Histone H4	-	5e-29	At5g59690	histone H4	C.G.	S.X.	Please select
0.39	1e-125	448	Zm.6721.10.S1_at	CD439023	Histone H4	-	2e-24	At5g59690	histone H4	C.G.	S.X.	Please select
0.44	4e-125	446	Zm.6721.1.A1_x_at	AI622516	Histone H4	-	1e-16	At5g59690	histone H4	C.G.	S.X.	Please select
0.42	4e-125	446	Zm.6721.7.A1_a_at	BM382578	Histone H4	-	1e-16	At5g59690	histone H4	C.G.	S.X.	Please select
0.42	4e-122	436	Zm.15826.1.A1_at	CF602424	Histone H4	-	2e-31	At5g59690	histone H4	C.G.	S.X.	Please select
0.34	9e-120	428	Zm.6721.8.S1_at	BM072748	Histone H4	-	7e-19	At3g53730	histone H4	C.G.	S.X.	Please select
0.46	9e-117	418	Zm.6721.9.A1_a_at	BM380489	Histone H4	-	6e-18	At5g59970	histone H4	C.G.	S.X.	Please select
0.44	3e-113	406	Zm.6721.4.A1_s_at	BU079744	Histone H4	-	8e-33	At5g59690	histone H4	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.24	6e-18	91	Arabidopsis thaliana	At1g07660	837279	histone H4	F:DNA binding;P:nucleosome assembly;C:plasma membrane, chloroplast;MOPFV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.53	1e-81	303	Glycine max	PsAffx.C1000260_s_at	PsAffx.C1000260	-	-	9e-10	At5g59690	histone H4	C.G.	S.X.	Please select
0.51	1e-125	448	Hordeum vulgare	Contig197_at	Contig197	-	-	1e-24	At5g59690	histone H4	C.G.	S.X.	Please select
0.54	1e-122	440	Oryza sativa	Os09g0433600	AK058686.1	-	Histone H4	2e-20	At1g07660	histone H4	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.35	5e-19	95	Populus trichocarpa	PtpAffx.104205.1.A1_at	CV277856	-	-	1e-25	At5g59690	histone H4	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.58	5e-157	553	Triticum aestivum	Ta.17099.2.S1_at	CA624635	-	-	1e-3	At1g07660	histone H4	C.G.	S.X.	Please select
0.42	2e-18	91	Vitis vinifera	1613076_at	CB970842	-	-	2e-42	At5g59690	histone H4	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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