Gene omics information

Query gene ID	Zm.6703.1.A1_at
Gene name	hypothetical protein LOC100273224
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.57	75.1	Zm.6703.1.A1_at	CA398710	hypothetical protein LOC100273224	-	1e+0	At2g01120	ORC4 (ORIGIN RECOGNITION COMPLEX SUBUNIT 4)	S.X.	H.G.	Please select
0.83	95.6	Zm.853.1.A1_at	AI395965	hypothetical protein LOC100276013	-	2e-12	At4g01150	unknown protein	S.X.	H.G.	Please select
0.73	89.9	Zm.3570.1.A1_at	BG840178	-	-	6e-1	At1g54260	histone H1/H5 family protein	S.X.	H.G.	Please select
0.67	85.8	Zm.3569.1.A1_at	CO518726	hypothetical protein LOC100280101	-	5e+0	At3g55600	-	S.X.	H.G.	Please select
0.67	85.8	Zm.3571.1.S1_at	BG265645	Hypothetical protein LOC100193516	-	4e+0	At4g17030	ATEXLB1 (ARABIDOPSIS THALIANA EXPANSIN-LIKE B1)	S.X.	H.G.	Please select
0.13	6.8	Zm.16828.2.S1_a_at	CF632030	amelogenin precursor like protein	-	5e+0	Atcg01120	-	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
19.7	99.3	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.8	98.9	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.8	98.6	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.5	98.4	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.6	98.3	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.3	98.2	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.0	97.7	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.9	97.7	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.3	96.9	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.6	96.4	GSM253281	ZM_8d_SG200_3Alu_II	GSE10023	Maize gene expression during infection with Ustilago maydis

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	8e-3	40	Zm.3183.1.A1_at	CF634309	hypothetical protein LOC100274988	-	7e+0	At5g55640	unknown protein	C.G.	S.X.	Please select
0.04	8e-3	40	Zm.17681.1.S1_at	CK369980	hypothetical protein LOC100193448	-	7e-1	At1g43900	protein phosphatase 2C, putative / PP2C, putative	C.G.	S.X.	Please select
0.03	8e-3	40	Zm.16988.4.A1_at	AW498129	-	-	3e-54	At5g62690	TUB2	C.G.	S.X.	Please select
0.03	3e-2	38	Zm.9319.1.A1_at	CF627080	hypothetical protein LOC100216855	-	2e+0	At5g10000	ATFD4 (ferredoxin 4)	C.G.	S.X.	Please select
0.02	3e-2	38	Zm.7117.2.A1_at	CF627265	hypothetical protein LOC100273279	-	3e+0	At5g40155	-	C.G.	S.X.	Please select
0.02	3e-2	38	Zm.5270.1.S1_at	CF623217	bax inhibitor 1	-	2e-3	At5g47120	ATBI1 (BAX INHIBITOR 1)	C.G.	S.X.	Please select
0.03	3e-2	38	Zm.4449.1.A1_at	BM074466	-	-	3e-2	At1g09560	GLP5 (GERMIN-LIKE PROTEIN 5)	C.G.	S.X.	Please select
0.02	3e-2	38	Zm.3670.3.S1_at	CK827983	glycine-rich protein A3	-	4e-5	At5g45350	proline-rich family protein	C.G.	S.X.	Please select
0.01	3e-2	38	Zm.2470.1.A1_at	AY108770.1	hypothetical protein LOC100193081	-	2e-20	At1g16270	protein kinase family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	1e+0	34	Arabidopsis thaliana	At2g01120	814641	ORC4 (ORIGIN RECOGNITION COMPLEX SUBUNIT 4)	Origin Recognition Complex subunit 4. Involved in the initiation of DNA replication. Regulated transcriptionally during cell cycle, peaking at G1/S-phase. Target of E2F/DF family of transcription factors. Interacts with all ORC subunits except ORC1b.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.06	4e-1	36	Glycine max	Gma.11165.1.S1_at	BQ079979	-	-	2e+0	At5g10990	auxin-responsive family protein	C.G.	S.X.	Please select
0.03	6e-1	34	Hordeum vulgare	HVSMEc0002N01f2_s_at	HVSMEc0002N01f2	-	-	1e+1	At5g43245	unknown protein	C.G.	S.X.	Please select
0.17	8e-28	125	Oryza sativa	Os03g0378000	AK099806.1	-	Nucleoside phosphatase GDA1/CD39 family protein	2e-5	At2g02970	nucleoside phosphatase family protein / GDA1/CD39 family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	7e+0	32	Populus trichocarpa	PtpAffx.210822.1.S1_at	pmrna21242	hypothetical protein	-	3e-1	At5g26710	glutamate-tRNA ligase, putative / glutamyl-tRNA synthetase, putatuve / GluRS, putative	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	3e-1	36	Triticum aestivum	Ta.4573.1.S1_at	BJ268143	-	-	2e+0	At3g47870	LBD27 (LOB DOMAIN-CONTAINING PROTEIN 27)	C.G.	S.X.	Please select
0.04	9e-2	36	Vitis vinifera	1614357_s_at	CF518239	hypothetical protein LOC100244083	-	3e+0	At5g56660	ILL2	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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