Gene omics information

Query gene ID	Zm.6684.1.S1_x_at
Gene name	60S ribosomal protein L29
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.0	Zm.6684.1.S1_x_at	CF019431	60S ribosomal protein L29	-	4e-19	At3g06700	60S ribosomal protein L29 (RPL29A)	S.X.	H.G.	Please select
0.83	95.6	Zm.697.1.A1_a_at	AB102957.1	histidine kinase 3	-	1e-17	At5g35750	AHK2 (ARABIDOPSIS HISTIDINE KINASE 2)	S.X.	H.G.	Please select
0.73	89.9	Zm.7713.1.A1_at	BM079602	-	-	1e+0	At2g05635	ATP binding / ATP-dependent DNA helicase/ DNA binding	S.X.	H.G.	Please select
0.59	76.1	Zm.253.1.A1_at	CF020390	hypothetical protein LOC100279053	-	5e+0	At5g29807	unknown protein	S.X.	H.G.	Please select
0.47	59.9	Zm.12634.4.S1_a_at	CF057123	60S ribosomal protein L23	-	8e-61	At1g04480	60S ribosomal protein L23 (RPL23A)	S.X.	H.G.	Please select
0.29	28.1	Zm.2529.1.A1_s_at	BQ539485	-	-	1e+0	At3g17240	mtLPD2 (LIPOAMIDE DEHYDROGENASE 2)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
3.3	94.7	GSM205374	B73 13 DAP endosperm tissue biological replicate 3	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
3.3	94.7	GSM205370	B73 13 DAP endosperm tissue biological replicate 2	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
3.2	94.5	GSM205366	B73 13 DAP endosperm tissue biological replicate 1	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
3.0	94.0	GSM202298	B73 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
3.0	94.0	GSM205369	Mo17 13 DAP endosperm tissue biological replicate 2	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
2.9	93.8	GSM205371	Mo17xB73 13 DAP endosperm tissue biological replicate 2	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
2.9	93.8	GSM202307	B73xMo17 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
2.8	93.5	GSM202302	B73xMo17 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
2.6	92.9	GSM205376	B73xMo17 13 DAP endosperm tissue biological replicate 3	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
2.6	92.9	GSM205373	Mo17 13 DAP endosperm tissue biological replicate 3	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.90	0	1072	Zm.6684.1.S1_a_at	CF019431	60S ribosomal protein L29	-	4e-19	At3g06700	60S ribosomal protein L29 (RPL29A)	C.G.	S.X.	Please select
0.75	0	741	Zm.6684.4.S1_at	AI739945	-	-	2e-19	At3g06700	60S ribosomal protein L29 (RPL29A)	C.G.	S.X.	Please select
0.43	3e-104	377	Zm.5632.3.S1_x_at	CF040781	60S ribosomal protein L29	-	4e-19	At3g06700	60S ribosomal protein L29 (RPL29A)	C.G.	S.X.	Please select
0.27	2e-71	268	Zm.6182.1.S1_at	CF039823	60S ribosomal protein L29	-	1e-21	At3g06700	60S ribosomal protein L29 (RPL29A)	C.G.	S.X.	Please select
0.24	3e-67	254	Zm.14451.2.S1_at	CK348209	60S ribosomal protein L29	-	4e-16	At3g06700	60S ribosomal protein L29 (RPL29A)	C.G.	S.X.	Please select
0.06	2e-25	115	Zm.17836.1.A1_at	CK370651	60S ribosomal protein L31	-	4e-22	At5g56710	60S ribosomal protein L31 (RPL31C)	C.G.	S.X.	Please select
0.06	2e-25	115	Zm.17836.1.A1_x_at	CK370651	60S ribosomal protein L31	-	4e-22	At5g56710	60S ribosomal protein L31 (RPL31C)	C.G.	S.X.	Please select
0.07	3e-21	101	Zm.1504.1.S1_at	BF727955	hypothetical protein LOC100275840 /// hypothetical protein LOC100276628	-	4e-1	At2g36100	integral membrane family protein	C.G.	S.X.	Please select
0.07	2e-19	95	Zm.4658.1.A1_at	CK849974	-	-	3e-1	At2g10970	invertase/pectin methylesterase inhibitor family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.28	4e-19	95	Arabidopsis thaliana	At3g06700	819855	60S ribosomal protein L29 (RPL29A)	F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic large ribosomal subunit, ribosome, nucleolus;MOPF	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.22	4e-20	99	Glycine max	GmaAffx.92716.1.S1_at	CF805792	-	-	4e-12	At3g06700	60S ribosomal protein L29 (RPL29A)	C.G.	S.X.	Please select
0.15	8e-53	206	Hordeum vulgare	Contig2843_s_at	Contig2843	-	-	4e-20	At3g06700	60S ribosomal protein L29 (RPL29A)	C.G.	S.X.	Please select
0.28	2e-62	240	Oryza sativa	Os01g0304000	AK105054.1	-	Ribosomal L29e protein family protein	3e-25	At3g06700	60S ribosomal protein L29 (RPL29A)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.19	4e-20	99	Populus trichocarpa	Ptp.2710.1.S1_s_at	BU865876	hypothetical protein	-	2e-14	At3g06700	60S ribosomal protein L29 (RPL29A)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.57	2e-123	442	Triticum aestivum	Ta.12895.1.A1_at	CD491023	-	-	1e-21	At3g06700	60S ribosomal protein L29 (RPL29A)	C.G.	S.X.	Please select
0.22	5e-19	93	Vitis vinifera	1607455_at	CB975693	similar to 60S ribosomal protein L29	-	1e-18	At3g06700	60S ribosomal protein L29 (RPL29A)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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