Gene omics information

Query gene ID	Zm.6645.1.S1_at
Gene name	NADH ubiquinone oxidoreductase B22-like subunit
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.77	92.1	Zm.6645.1.S1_at	CF637989	NADH ubiquinone oxidoreductase B22-like subunit	-	2e+0	At2g40810	AtATG18c	S.X.	H.G.	Please select
0.44	55.7	Zm.3925.1.A1_at	CF045284	hypothetical protein LOC100273553	-	4e-8	At1g31930	XLG3 (extra-large GTP-binding protein 3)	S.X.	H.G.	Please select
0.36	41.3	Zm.17248.2.S1_a_at	AW054520	hypothetical protein LOC100280404	-	3e-10	At5g37510	EMB1467 (embryo defective 1467)	S.X.	H.G.	Please select
0.36	41.3	Zm.16810.2.A1_at	AW067350	hypothetical protein LOC100192849	-	2e-3	At5g66560	phototropic-responsive NPH3 family protein	S.X.	H.G.	Please select
0.31	31.6	Zm.13388.1.A1_at	AF457984.1	Hypothetical protein LOC100191540	-	6e-1	At4g35610	zinc finger (C2H2 type) family protein	S.X.	H.G.	Please select
0.21	15.5	Zm.10534.1.A1_x_at	CO049306	receptor protein kinase CLAVATA1	-	2e+0	At2g36890	RAX2 (REGULATOR OF AXILLARY MERISTEMS 2)	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
3.8	95.5	GSM258538	DpDf siblings in family segregating for T5-6b DpDf plants; Biological replicate 4	GSE10243	Profiling expression changes caused by a segmental aneuploid in maize
3.3	94.7	GSM258536	DpDf siblings in family segregating for T5-6b DpDf plants; Biological replicate 3	GSE10243	Profiling expression changes caused by a segmental aneuploid in maize
3.2	94.5	GSM258534	DpDf siblings in family segregating for T5-6b DpDf plants; Biological replicate 2	GSE10243	Profiling expression changes caused by a segmental aneuploid in maize
2.8	93.5	GSM258532	DpDf siblings in family segregating for T5-6b DpDf plants; Biological replicate 1	GSE10243	Profiling expression changes caused by a segmental aneuploid in maize
2.0	90.2	GSM290553	WS1 with array type maize from Affymetrix	GSE11531	Downregulation of cinnamoyl-coenzyme A reductase in maize (affy_ccr_maize)
1.9	89.6	GSM290554	WS2 with array type maize from Affymetrix	GSE11531	Downregulation of cinnamoyl-coenzyme A reductase in maize (affy_ccr_maize)
1.9	89.6	GSM253277	ZM_8d_SG200_3inf_I	GSE10023	Maize gene expression during infection with Ustilago maydis
1.9	89.6	GSM258533	Wild-type siblings in family segregating for T5-6b DpDf plants; Biological replicate 2	GSE10243	Profiling expression changes caused by a segmental aneuploid in maize
1.9	89.6	GSM290555	CCR mutant M1 with array type maize from Affymetrix	GSE11531	Downregulation of cinnamoyl-coenzyme A reductase in maize (affy_ccr_maize)
1.9	89.6	GSM258535	Wild-type siblings in family segregating for T5-6b DpDf plants; Biological replicate 3	GSE10243	Profiling expression changes caused by a segmental aneuploid in maize

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	1e-11	69	Zm.17533.1.S1_at	AY106795.1	hypothetical protein LOC100193668	-	1e-1	At5g17380	pyruvate decarboxylase family protein	C.G.	S.X.	Please select
0.11	7e-10	63	Zm.9326.1.A1_at	BM332291	hypothetical protein LOC100193353	-	5e+0	At5g09600	SDH3-1	C.G.	S.X.	Please select
0.01	7e-1	34	Zm.5665.1.A1_at	CF015743	hypothetical protein LOC100277219	-	7e-2	At4g31180	aspartyl-tRNA synthetase, putative / aspartate--tRNA ligase, putative	C.G.	S.X.	Please select
0.02	7e-1	34	Zm.16164.1.A1_at	CF636671	hypothetical protein LOC100193963	-	9e-2	At2g01170	BAT1 (BIDIRECTIONAL AMINO ACID TRANSPORTER 1)	C.G.	S.X.	Please select
0.02	3e+0	32	Zm.5113.2.A1_a_at	CF633388	-	-	1e+0	At3g18590	plastocyanin-like domain-containing protein	C.G.	S.X.	Please select
0.01	3e+0	32	Zm.4338.2.S1_at	AJ401274.1	peroxidase	-	9e-4	At4g16270	peroxidase 40 (PER40) (P40)	C.G.	S.X.	Please select
0.01	3e+0	32	Zm.231.1.S1_at	CK827218	invertase2	-	3e-4	At1g62660	beta-fructosidase (BFRUCT3) / beta-fructofuranosidase / invertase, vacuolar	C.G.	S.X.	Please select
0.01	3e+0	32	Zm.22.1.S1_a_at	M26227.1	anthocyanin regulatory Lc protein	-	9e-5	At1g63650	EGL3 (ENHANCER OF GLABRA 3)	C.G.	S.X.	Please select
0.01	3e+0	32	Zm.13265.1.A1_at	AY110086.1	-	-	1e-3	At1g12240	ATBETAFRUCT4	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	2e+0	34	Arabidopsis thaliana	At2g40810	818678	AtATG18c	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOPB	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.17	2e-19	97	Glycine max	Gma.9951.1.S1_at	BM085764	-	-	3e-7	At4g34700	complex 1 family protein / LVR family protein	C.G.	S.X.	Please select
0.45	5e-110	397	Hordeum vulgare	Contig4300_at	Contig4300	-	-	6e-9	At4g34700	complex 1 family protein / LVR family protein	C.G.	S.X.	Please select
0.38	4e-89	329	Oryza sativa	Os.46326.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.06	1e-4	48	Populus trichocarpa	Ptp.2001.1.S1_s_at	CV277245	hypothetical protein	-	4e-13	At4g34700	complex 1 family protein / LVR family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.45	1e-112	406	Triticum aestivum	TaAffx.112923.1.S1_at	CA619742	-	-	1e+1	At3g60280	UCC3 (UCLACYANIN 3)	C.G.	S.X.	Please select
0.03	2e+0	32	Vitis vinifera	1616958_s_at	CF371819	hypothetical protein LOC100248073	-	1e-3	Atmg00840	-	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage