Gene omics information

Query gene ID	Zm.6579.1.A1_at
Gene name	hypothetical protein LOC100192017
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.53	69.1	Zm.6579.1.A1_at	AI444791	hypothetical protein LOC100192017	-	7e-1	Atmg01350	-	S.X.	H.G.	Please select
0.60	77.8	Zm.6575.1.A1_at	AI737943	protein binding protein	-	1e+1	Atmg00010	-	S.X.	H.G.	Please select
0.55	71.6	Zm.6577.1.A1_at	AI714833	-	-	3e-13	At5g51480	SKS2 (SKU5 SIMILAR 2)	S.X.	H.G.	Please select
0.27	24.6	Zm.372.1.S1_at	AF058757.1	indeterminate growth1	-	9e-7	At1g14580	zinc finger (C2H2 type) family protein	S.X.	H.G.	Please select
0.27	24.6	Zm.2037.1.S1_a_at	CD219439	-	-	2e-1	At2g39855	unknown protein	S.X.	H.G.	Please select
0.21	15.5	Zm.8331.1.A1_at	BM349811	-	-	9e-3	At1g72430	auxin-responsive protein-related	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
16.1	99.0	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.2	98.9	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.9	98.9	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.6	98.7	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.1	98.6	GSM162266	Wild type 2 with array type maize from Affymetrix	GSE7030	Phenotypic and molecular characterisation of a novel Bt2 allele in maize
11.6	98.6	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.0	98.5	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.9	98.5	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.6	98.4	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.1	98.4	GSM162264	Mutant 2 with array type maize from Affymetrix	GSE7030	Phenotypic and molecular characterisation of a novel Bt2 allele in maize

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	3e-7	56	Zm.10461.1.S1_at	CA826724	-	-	3e+0	At2g25605	unknown protein	C.G.	S.X.	Please select
0.01	2e-2	40	Zm.3058.1.A1_at	BM338821	glucose-6-phosphate 1-dehydrogenase, cytoplasmic isoform	-	6e-36	At3g27300	G6PD5 (glucose-6-phosphate dehydrogenase 5)	C.G.	S.X.	Please select
0.02	2e-2	40	Zm.15395.1.A1_at	BM331775	Hypothetical protein LOC100217307	-	5e+0	At4g18040	EIF4E (EUKARYOTIC TRANSLATION INITATION FACTOR 4E)	C.G.	S.X.	Please select
0.02	8e-2	38	Zm.9384.1.A1_at	BM349149	-	-	6e+0	At4g28170	unknown protein	C.G.	S.X.	Please select
0.01	8e-2	38	Zm.8470.1.S1_at	AF493561.1	sucrose-phosphatase	-	4e+0	At5g17220	ATGSTF12 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE PHI 12)	C.G.	S.X.	Please select
0.01	8e-2	38	Zm.7992.1.S1_at	BM340530	dcp1-like decapping family protein	-	3e-6	At1g08370	DCP1 (decapping 1)	C.G.	S.X.	Please select
0.01	8e-2	38	Zm.238.1.S1_at	CO523309	SBP-domain protein 4	-	4e-6	At1g02065	SPL8 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 8)	C.G.	S.X.	Please select
0.01	8e-2	38	Zm.18715.1.A1_at	CF623568	-	-	7e-4	At2g22670	IAA8	C.G.	S.X.	Please select
0.01	8e-2	38	Zm.13991.1.S1_at	AW424608	peroxidase 1	-	1e-2	At1g44970	peroxidase, putative	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	7e-1	36	Arabidopsis thaliana	Atmg01350	-	-	hypothetical protein	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	3e-1	38	Glycine max	PsAffx.CL1842Contig1_at	PsAffx.CL1842Contig1	-	-	9e-1	At2g34840	coatomer protein epsilon subunit family protein / COPE family protein	C.G.	S.X.	Please select
0.57	1e-139	496	Hordeum vulgare	Contig6353_at	Contig6353	-	-	3e+0	At5g63230	-	C.G.	S.X.	Please select
0.47	4e-112	406	Oryza sativa	Os01g0238500	AK067076.1	-	Branched-chain-amino-acid aminotransferase-likeprotein 3, chloroplast precursor	8e-1	At2g45080	cycp3	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	3e-1	38	Populus trichocarpa	PtpAffx.126640.2.S1_at	CV244347	hypothetical protein	-	1e-8	At1g08465	YAB2 (YABBY2)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.52	4e-129	462	Triticum aestivum	Ta.5667.1.S1_at	CD454421	-	-	7e-1	At4g38781	unknown protein	C.G.	S.X.	Please select
0.02	3e+0	32	Vitis vinifera	1622271_at	BM437605	-	-	1e-7	At5g11090	serine-rich protein-related	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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