Gene omics information

Query gene ID	Zm.6567.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.0	Zm.6567.1.A1_at	BM072999	-	-	2e+0	At5g41030	TCP family transcription factor, putative	S.X.	H.G.	Please select
0.60	77.8	Zm.4027.2.A1_at	CO527250	hypothetical protein LOC100272558	-	6e-1	At1g49600	ATRBP47A (Arabidopsis thaliana RNA-binding protein 47a)	S.X.	H.G.	Please select
0.60	77.8	Zm.7519.1.A1_at	BM337506	-	-	1e+0	At1g70895	CLE17 (CLAVATA3/ESR-RELATED 17)	S.X.	H.G.	Please select
0.59	76.1	Zm.5872.1.A1_at	CF037565	-	-	8e-14	At1g73720	transducin family protein / WD-40 repeat family protein	S.X.	H.G.	Please select
0.57	75.1	Zm.14463.1.A1_at	BM336602	hypothetical protein LOC100194081	-	2e+0	At4g22380	ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	S.X.	H.G.	Please select
0.55	71.6	Zm.5850.1.A1_at	CF623894	-	-	2e-7	At4g04910	NSF (N-ethylmaleimide sensitive factor)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
5.7	97.2	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.5	96.3	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.1	95.9	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.1	95.9	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.0	95.8	GSM205434	Mo17xB73 19 DAP endosperm tissue biological replicate 3	GSE8278	Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
3.9	95.7	GSM205425	B73 19 DAP endosperm tissue biological replicate 2	GSE8278	Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
3.7	95.4	GSM205365	Mo17 13 DAP endosperm tissue biological replicate 1	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
3.6	95.2	GSM205424	Mo17 19 DAP endosperm tissue biological replicate 2	GSE8278	Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
3.5	95.1	GSM205427	Mo17xB73 19 DAP endosperm tissue biological replicate 2	GSE8278	Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
3.5	95.1	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	1e+0	34	Zm.9778.1.A1_at	BM338606	outer envelope protein	-	3e-3	At2g43950	OEP37	C.G.	S.X.	Please select
0.02	1e+0	34	Zm.5532.1.A1_at	BM079963	hypothetical protein LOC100276042	-	7e+0	At5g58500	LSH5 (LIGHT SENSITIVE HYPOCOTYLS 5)	C.G.	S.X.	Please select
0.01	4e+0	32	Zm.6342.1.S1_at	AW052791	-	-	2e-13	At1g52540	protein kinase, putative	C.G.	S.X.	Please select
0.01	4e+0	32	Zm.4051.1.A1_at	CB350632	protein SUR2	-	1e-27	At1g69640	SBH1 (SPHINGOID BASE HYDROXYLASE 1)	C.G.	S.X.	Please select
0.01	4e+0	32	Zm.2849.1.S1_at	CD219229	shaggy-related protein kinase eta	-	4e-52	At1g06390	GSK1 (GSK3/SHAGGY-LIKE PROTEIN KINASE 1)	C.G.	S.X.	Please select
0.01	4e+0	32	Zm.2077.1.A1_at	CA401374	-	-	1e-1	At3g59820	calcium-binding mitochondrial protein-related	C.G.	S.X.	Please select
0.01	4e+0	32	Zm.1803.1.A1_at	CK369047	-	-	6e-1	At5g42110	unknown protein	C.G.	S.X.	Please select
0.01	4e+0	32	Zm.174.1.A1_at	AF073330.1	replication origin activator 2	-	1e-83	At5g46280	DNA replication licensing factor, putative	C.G.	S.X.	Please select
0.01	4e+0	32	Zm.15761.1.A1_at	CD446665	-	-	1e-17	At1g10520	DNA polymerase lambda (POLL)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	2e+0	34	Arabidopsis thaliana	At5g41030	834105	TCP family transcription factor, putative	F:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;PM	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	9e-7	56	Glycine max	Gma.180.1.S1_at	BI702009	-	-	1e+0	At2g07815	unknown protein	C.G.	S.X.	Please select
0.27	1e-49	196	Hordeum vulgare	Contig14104_at	Contig14104	-	-	5e-1	At2g06570	unknown protein	C.G.	S.X.	Please select
0.25	3e-66	254	Oryza sativa	Os01g0883200	AK058727.1	-	Conserved hypothetical protein	3e+0	At4g24230	ACBP3 (ACYL-COA-BINDING DOMAIN 3)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	8e-1	36	Populus trichocarpa	PtpAffx.153815.1.A1_at	CV241744	-	-	2e-1	At1g77765	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.44	2e-77	289	Triticum aestivum	Ta.15625.1.S1_at	CA485877	-	-	4e+0	At4g21870	26.5 kDa class P-related heat shock protein (HSP26.5-P)	C.G.	S.X.	Please select
0.02	3e+0	32	Vitis vinifera	1619857_at	CF568830	-	-	7e-8	At2g23950	leucine-rich repeat family protein / protein kinase family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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