Gene omics information

Query gene ID	Zm.6562.2.A1_a_at
Gene name	plasma membrane associated protein
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.0	Zm.6562.2.A1_a_at	CK347763	plasma membrane associated protein	-	6e+0	At5g56990	-	S.X.	H.G.	Please select
0.61	79.5	Zm.9237.1.A1_at	BM350875	-	-	4e-1	At3g07750	3' exoribonuclease family domain 1-containing protein	S.X.	H.G.	Please select
0.60	77.8	Zm.14407.2.S1_at	AW424519	hypothetical protein LOC100272648	-	3e-140	At1g56070	LOS1	S.X.	H.G.	Please select
0.44	55.7	Zm.12236.1.A1_at	CA830514	hypothetical protein LOC100194199	-	5e+0	At3g13970	APG12B (AUTOPHAGY 12 B)	S.X.	H.G.	Please select
0.35	38.9	Zm.5166.1.S1_at	AI612220	-	-	1e+0	At2g19690	PLA2-BETA (PHOSPHOLIPASE A2-BETA)	S.X.	H.G.	Please select
0.23	18.6	Zm.19208.1.A1_at	CO525556	-	-	1e+0	At1g04930	hydroxyproline-rich glycoprotein family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
34.2	99.9	GSM162264	Mutant 2 with array type maize from Affymetrix	GSE7030	Phenotypic and molecular characterisation of a novel Bt2 allele in maize
10.5	98.4	GSM290553	WS1 with array type maize from Affymetrix	GSE11531	Downregulation of cinnamoyl-coenzyme A reductase in maize (affy_ccr_maize)
9.8	98.3	GSM320472	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.4	98.1	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.1	98.0	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.8	97.9	GSM320471	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.4	97.8	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.8	97.6	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.7	97.6	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.6	97.6	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.23	3e-74	278	Zm.6279.1.A1_at	AI691230	-	-	3e-1	At2g45570	CYP76C2	C.G.	S.X.	Please select
0.09	5e-11	67	Zm.10576.1.A1_at	BQ539323	plasma membrane associated protein	-	3e-1	At1g29520	AWPM-19-like membrane family protein	C.G.	S.X.	Please select
0.02	4e-2	38	Zm.9082.1.A1_at	BG320535	-	-	1e+1	At5g08185	MIR162A (MICRORNA 162A)	C.G.	S.X.	Please select
0.04	4e-2	38	Zm.3157.4.A1_at	AI734519	-	-	5e-1	At1g09220	pentatricopeptide (PPR) repeat-containing protein	C.G.	S.X.	Please select
0.03	4e-2	38	Zm.2959.1.S1_at	CA403221	hypothetical protein LOC100279493	-	7e-1	At5g18970	AWPM-19-like membrane family protein	C.G.	S.X.	Please select
0.04	4e-2	38	Zm.1863.1.S1_at	AW498133	-	-	9e-1	At3g15250	unknown protein	C.G.	S.X.	Please select
0.01	2e-1	36	Zm.5814.1.A1_at	AI649760	hypothetical protein LOC100280358 /// set1 complex component swd2	-	9e-4	At5g66240	transducin family protein / WD-40 repeat family protein	C.G.	S.X.	Please select
0.02	7e-1	34	Zm.6528.1.A1_at	AY103780.1	hypothetical protein LOC100277187	-	9e+0	Atmg01350	-	C.G.	S.X.	Please select
0.01	7e-1	34	Zm.5914.1.A1_at	CA402103	nac4 protein	-	4e-12	At3g04060	anac046 (Arabidopsis NAC domain containing protein 46)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	6e+0	32	Arabidopsis thaliana	At5g56990	835801	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	1e-1	38	Glycine max	Gma.13204.1.S1_at	BI316229	-	-	2e-8	At1g29520	AWPM-19-like membrane family protein	C.G.	S.X.	Please select
0.03	5e-2	38	Hordeum vulgare	HV_CEa0002E17r2_s_at	HV_CEa0002E17r2	-	-	5e-6	At1g08830	CSD1 (COPPER/ZINC SUPEROXIDE DISMUTASE 1)	C.G.	S.X.	Please select
0.47	3e-83	309	Oryza sativa	Os01g0699900	AK067766.1	-	AWPM-19-like family protein	2e-3	At5g18970	AWPM-19-like membrane family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	5e-1	36	Populus trichocarpa	PtpAffx.201327.1.S1_s_at	pmrna2632	cc-nbs-lrr resistance protein	-	8e-1	At3g16070	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.21	1e-22	107	Triticum aestivum	TaAffx.84590.1.S1_at	CA633613	-	-	2e+1	At5g38310	unknown protein	C.G.	S.X.	Please select
0.03	2e+0	32	Vitis vinifera	1607255_at	CF373225	hypothetical protein LOC100243801	-	2e-39	At5g58590	RANBP1 (RAN BINDING PROTEIN 1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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