Gene omics information

Query gene ID	Zm.6556.1.A1_at
Gene name	hypothetical protein LOC100273410
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	85.8	Zm.6556.1.A1_at	AY109683.1	hypothetical protein LOC100273410	-	7e-19	At2g34160	nucleic acid binding	S.X.	H.G.	Please select
0.61	79.5	ZmAffx.116.1.A1_at	AI665610	-	-	3e+0	At5g47700	60S acidic ribosomal protein P1 (RPP1C)	S.X.	H.G.	Please select
0.59	76.1	Zm.18107.1.S1_a_at	AY536125.1	meg5 protein	-	3e-1	At5g22190	unknown protein	S.X.	H.G.	Please select
0.50	65.7	Zm.2688.2.A1_a_at	CK986048	hypothetical protein LOC100273855	-	5e+0	At3g25120	mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein	S.X.	H.G.	Please select
0.40	48.5	Zm.13758.1.S1_at	CO518279	UDP-glucuronic acid decarboxylase 1	-	1e+0	At3g12130	KH domain-containing protein / zinc finger (CCCH type) family protein	S.X.	H.G.	Please select
0.38	44.2	Zm.14073.1.S1_s_at	CD995440	60S ribosomal protein L28	-	8e-9	At2g19730	60S ribosomal protein L28 (RPL28A)	S.X.	H.G.	Please select
0.25	21.3	ZmAffx.932.1.S1_at	AI795506	-	-	3e+0	At5g22430	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
3.0	94.0	GSM202290	Mo17 immature ear tissue, biological replicate 1	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
2.9	93.8	GSM202306	Mo17xB73 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
2.9	93.8	GSM202319	Mo17 19 day after pollination embryo tissue, biological replicate 3	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
2.9	93.8	GSM202307	B73xMo17 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
2.8	93.5	GSM202303	Mo17 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
2.8	93.5	GSM202309	Mo17 19 day after pollination embryo tissue, biological replicate 1	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
2.8	93.5	GSM202296	B73xMo17 immature ear tissue, biological replicate 1	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
2.8	93.5	GSM202292	B73 immature ear tissue, biological replicate 1	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
2.8	93.5	GSM202314	Mo17 19 day after pollination embryo tissue, biological replicate 2	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
2.7	93.2	GSM205373	Mo17 13 DAP endosperm tissue biological replicate 3	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.55	3e-173	607	Zm.6159.2.A1_x_at	BE510560	-	-	1e-20	At2g34160	nucleic acid binding	C.G.	S.X.	Please select
0.53	5e-135	480	Zm.6159.1.A1_a_at	BM380722	hypothetical protein LOC100275297	-	6e-21	At2g34160	nucleic acid binding	C.G.	S.X.	Please select
0.20	5e-27	121	Zm.12251.1.S1_at	AY104373.1	hypothetical protein LOC100275927	-	7e-18	At2g34160	nucleic acid binding	C.G.	S.X.	Please select
0.12	2e-17	89	Zm.10506.1.S1_at	BQ578130	-	-	5e-10	At1g29250	nucleic acid binding	C.G.	S.X.	Please select
0.02	4e-3	42	Zm.9742.1.A1_at	BU099018	hypothetical protein LOC100274643	-	3e+0	At5g01380	transcription factor	C.G.	S.X.	Please select
0.01	6e-2	38	Zm.8750.1.A1_at	BM336352	-	-	2e-1	At1g72230	plastocyanin-like domain-containing protein	C.G.	S.X.	Please select
0.01	6e-2	38	Zm.892.1.A1_at	CO519988	chlorophyll a-b binding protein 8	-	2e-22	At1g61520	LHCA3	C.G.	S.X.	Please select
0.01	6e-2	38	Zm.4898.1.S1_at	BI417088	hypothetical protein LOC100279412	-	6e-25	At4g16143	IMPA-2 (IMPORTIN ALPHA ISOFORM 2)	C.G.	S.X.	Please select
0.02	2e-1	36	ZmAffx.799.1.A1_at	AI770347	-	-	5e-2	At1g75080	BZR1 (BRASSINAZOLE-RESISTANT 1)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.21	7e-19	95	Arabidopsis thaliana	At2g34160	817977	nucleic acid binding	F:nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;PO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.23	7e-26	119	Glycine max	Gma.10674.1.S1_s_at	CD395933	-	-	4e-17	At2g34160	nucleic acid binding	C.G.	S.X.	Please select
0.32	3e-84	311	Hordeum vulgare	Contig13108_at	Contig13108	-	-	9e-17	At2g34160	nucleic acid binding	C.G.	S.X.	Please select
0.32	4e-77	289	Oryza sativa	Os01g0173100	AK121114.1	-	Conserved hypothetical protein	5e-19	At2g34160	nucleic acid binding	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.15	1e-21	105	Populus trichocarpa	Ptp.4243.1.S1_at	CV254595	hypothetical protein	-	1e-28	At1g29250	nucleic acid binding	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.48	1e-122	440	Triticum aestivum	TaAffx.112199.1.S1_at	CA626124	-	-	2e-7	At1g29250	nucleic acid binding	C.G.	S.X.	Please select
0.24	4e-27	121	Vitis vinifera	1616959_a_at	CA817373	hypothetical protein LOC100268144	-	4e-41	At2g34160	nucleic acid binding	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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