CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Zm.6521.1.A1_at

Gene name protein binding protein

Organism Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 85.8 Zm.6521.1.A1_at AW067094 protein binding protein - 7e-5 At1g68820 membrane protein, putative S.X. H.G.
0.67 85.8 Zm.832.1.S1_at AY107728.1 - - 1e+0 At1g54140 TAFII21 (TATA BINDING PROTEIN ASSOCIATED FACTOR 21KDA SUBUNIT) S.X. H.G.
0.60 77.8 Zm.6522.2.A1_a_at AY108423.1 mpv17 / PMP22 family protein - 2e-4 At1g52870 peroxisomal membrane protein-related S.X. H.G.
0.43 52.8 Zm.12365.1.S1_at AY106477.1 hypothetical protein LOC100193020 - 6e-1 At1g69680 - S.X. H.G.
0.36 41.3 Zm.16508.3.A1_x_at AI739900 ribosomal protein L39 - 4e-9 At3g02190 60S ribosomal protein L39 (RPL39B) S.X. H.G.
0.32 33.4 Zm.4339.1.A1_at AI711931 - - 1e+0 At1g47410 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
4.9 96.7 GSM206331 Lower pulvinus 5 min polysomal RNA biorep 2 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
4.5 96.3 GSM206325 Upper pulvinus 5 min polysomal RNA biorep 2 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
4.3 96.1 GSM206324 Upper pulvinus 2 min polysomal RNA biorep 2 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
3.8 95.5 GSM206326 Upper pulvinus 15 min polysomal RNA biorep 2 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
3.6 95.2 GSM206305 Right pulvinus control polysomal RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
3.4 94.9 GSM206306 Lower pulvinus 2 min polysomal RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
3.3 94.7 GSM206333 Lower pulvinus 30 min polysomal RNA biorep 2 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
3.3 94.7 GSM253282 ZM_8d_SG200_3Alu_III GSE10023 Maize gene expression during infection with Ustilago maydis
3.1 94.3 GSM375791 Deep-sowing 10d treatment GA3, biological rep1 GSE15048 Gibberellin-induced gene expression in maize mesocotyl under deep-sowing condition
3.0 94.0 GSM206313 Upper pulvinus 5 min total RNA biorep 2 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 5e-1 34 Zm.19154.1.A1_at CO527465 - - 5e+0 At2g45410 LBD19 (LOB DOMAIN-CONTAINING PROTEIN 19) C.G. S.X.
0.02 2e+0 32 Zm.8187.1.A1_at BG549555 kynurenine--oxoglutarate transaminase 1 - 6e+0 At5g43185 Expressed protein C.G. S.X.
0.01 2e+0 32 Zm.5548.3.A1_at BG837445 hypothetical protein LOC100193890 - 4e-10 At3g10740 ASD1 (ALPHA-L-ARABINOFURANOSIDASE 1) C.G. S.X.
0.01 2e+0 32 Zm.2704.1.S1_a_at AW066934 - - 2e-44 At3g44850 protein kinase-related C.G. S.X.
0.01 2e+0 32 Zm.2704.1.S1_at AW066934 - - 2e-44 At3g44850 protein kinase-related C.G. S.X.
0.02 2e+0 32 Zm.1539.1.S1_at AY112335.1 - - 5e-4 At1g63500 ATP binding / binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase C.G. S.X.
0.03 8e+0 30 ZmAffx.1118.2.A1_at AW267189 - - 8e-1 At2g27360 lipase, putative C.G. S.X.
0.03 8e+0 30 ZmAffx.1118.2.S1_at AW267189 - - 8e-1 At2g27360 lipase, putative C.G. S.X.
0.01 8e+0 30 Zm.9527.1.S1_at BM276871 hypothetical protein LOC100194058 - 5e-18 At1g60170 emb1220 (embryo defective 1220) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.09 7e-5 48 Arabidopsis thaliana At1g68820 843214 membrane protein, putative F:protein binding, zinc ion binding;P:unknown;C:unknown;MOPVF - - - C.G. S.X.
0.07 3e-2 40 Glycine max Gma.8637.1.S1_at BE820384 - - 9e-11 At1g68820 membrane protein, putative C.G. S.X.
0.16 7e-56 216 Hordeum vulgare Contig7543_at Contig7543 - - 3e-22 At1g68820 membrane protein, putative C.G. S.X.
0.20 8e-68 258 Oryza sativa Os03g0706900 AK065293.1 - Zn-finger, RING domain containing protein 2e-14 At1g73950 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.11 3e-8 59 Populus trichocarpa PtpAffx.7359.1.S1_at CK087792 hypothetical protein - 5e-3 At1g68820 membrane protein, putative C.G. S.X.
0.21 6e-52 204 Triticum aestivum Ta.23181.1.S1_at CK153402 - - 2e-4 At1g73950 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.03 1e+0 32 Vitis vinifera 1606959_at CF373364 hypothetical protein LOC100265624 - 1e-7 At2g40410 Ca(2+)-dependent nuclease, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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