Gene omics information

Query gene ID	Zm.652.1.S1_at
Gene name	methyl binding domain
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.41	49.7	Zm.652.1.S1_at	AY029559.1	methyl binding domain	-	2e-1	At5g17870	PSRP6 (PLASTID-SPECIFIC 50S RIBOSOMAL PROTEIN 6)	S.X.	H.G.	Please select
0.83	95.6	Zm.15780.1.A1_at	CD484576	-	-	4e+0	At3g01472	CPuORF33 (Conserved peptide upstream open reading frame 33)	S.X.	H.G.	Please select
0.77	92.1	Zm.8383.1.A1_at	BM078678	PCO062666 protein	-	4e-1	At5g47960	ATRABA4C	S.X.	H.G.	Please select
0.77	92.1	Zm.12152.1.S1_at	CK394699	hypothetical protein LOC100274505	-	1e-5	At1g63120	ATRBL2 (Arabidopsis thaliana Rhomboid-like 2)	S.X.	H.G.	Please select
0.77	92.1	Zm.15448.1.S1_at	CD448349	plastidic phosphate translocator-like protein1	-	4e-24	At4g32390	phosphate translocator-related	S.X.	H.G.	Please select
0.73	89.9	Zm.9088.1.A1_at	CB350848	-	-	1e+0	At2g06908	unknown protein	S.X.	H.G.	Please select
0.57	75.1	Zm.16892.1.A1_at	CO520304	calmodulin binding protein	-	2e-2	At3g22190	IQD5 (IQ-domain 5)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
5.7	97.2	GSM202298	B73 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
4.5	96.3	GSM202290	Mo17 immature ear tissue, biological replicate 1	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
4.3	96.1	GSM202303	Mo17 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
4.3	96.1	GSM202299	Mo17xB73 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
4.2	96.0	GSM202297	Mo17 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
3.8	95.5	GSM202295	Mo17xB73 immature ear tissue, biological replicate 1	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
3.8	95.5	GSM202304	B73 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
3.8	95.5	GSM202296	B73xMo17 immature ear tissue, biological replicate 1	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
3.8	95.5	GSM290555	CCR mutant M1 with array type maize from Affymetrix	GSE11531	Downregulation of cinnamoyl-coenzyme A reductase in maize (affy_ccr_maize)
3.6	95.2	GSM202302	B73xMo17 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.60	5e-164	577	Zm.651.1.S1_at	AY029558.1	methyl binding domain	-	4e+0	At5g40040	60S acidic ribosomal protein P2 (RPP2E)	C.G.	S.X.	Please select
0.09	8e-18	91	Zm.6853.1.A1_at	AI629950	hypothetical LOC542208	-	5e-2	At5g23760	heavy-metal-associated domain-containing protein	C.G.	S.X.	Please select
0.08	2e-15	83	Zm.1083.1.S1_at	AF527618.1	methyl binding domain	-	9e-1	At1g11240	unknown protein	C.G.	S.X.	Please select
0.01	1e-1	38	Zm.18885.1.A1_at	CO530040	hypothetical protein LOC100276818	-	3e+0	At5g28780	unknown protein	C.G.	S.X.	Please select
0.01	4e-1	36	Zm.12317.1.S1_at	AY106969.1	ethylene-responsive transcription factor 4	-	2e-12	At5g44210	ERF9 (ERF DOMAIN PROTEIN 9)	C.G.	S.X.	Please select
0.01	2e+0	34	Zm.9472.1.A1_at	CF006768	hypothetical protein LOC100276276	-	6e-6	At5g23760	heavy-metal-associated domain-containing protein	C.G.	S.X.	Please select
0.01	2e+0	34	Zm.8557.1.A1_at	BM336541	-	-	6e+0	At5g13120	peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein	C.G.	S.X.	Please select
0.01	2e+0	34	Zm.6973.1.A1_at	AY109828.1	Hypothetical protein LOC100216936	-	5e-1	At4g28830	methyltransferase/ nucleic acid binding	C.G.	S.X.	Please select
0.01	2e+0	34	Zm.6973.1.S1_at	AY109828.1	hypothetical protein AY109828	-	5e-1	At4g28830	methyltransferase/ nucleic acid binding	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	2e-1	38	Arabidopsis thaliana	At5g17870	831655	PSRP6 (PLASTID-SPECIFIC 50S RIBOSOMAL PROTEIN 6)	plastid-specific ribosomal protein 6 precursor (Psrp-6) - like	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	1e-3	46	Glycine max	GmaAffx.50765.1.S1_s_at	BF324605	-	-	1e+0	At1g73440	calmodulin-related	C.G.	S.X.	Please select
0.22	6e-65	248	Hordeum vulgare	Contig3489_at	Contig3489	-	-	4e+0	At3g13882	structural constituent of ribosome	C.G.	S.X.	Please select
0.27	1e-90	335	Oryza sativa	Os12g0620400	AK072503.1	-	Methyl-CpG binding domain containing protein	8e-1	At5g43175	basic helix-loop-helix (bHLH) family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	8e-2	40	Populus trichocarpa	PtpAffx.202434.1.S1_at	pmrna4878	hypothetical protein	-	1e-2	At5g24500	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.26	2e-75	284	Triticum aestivum	Ta.28299.2.S1_at	BE515497	MBD6	-	3e-2	At4g00905	-	C.G.	S.X.	Please select
0.02	7e-2	38	Vitis vinifera	1616177_at	BQ800589	similar to 3-methyladenine DNA glycosylase, putative; 31680-30045	-	2e+1	At5g42630	ATS (ABERRANT TESTA SHAPE)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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