Gene omics information

Query gene ID	Zm.6513.2.S1_a_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.88	96.7	Zm.6513.2.S1_a_at	CF043636	-	-	2e-15	At2g33430	DAL1 (DIFFERENTIATION AND GREENING-LIKE 1)	S.X.	H.G.	Please select
0.40	48.5	Zm.4464.1.A1_at	AY109260.1	TRANSPARENT TESTA 1 protein	-	2e+0	At1g34370	STOP1 (sensitive to proton rhizotoxicity 1)	S.X.	H.G.	Please select
0.38	44.2	Zm.3838.1.A1_at	CF063291	-	-	7e-4	At4g32272	-	S.X.	H.G.	Please select
0.22	16.9	Zm.12634.3.A1_a_at	AI891366	-	-	4e+0	At4g16830	nuclear RNA-binding protein (RGGA)	S.X.	H.G.	Please select
0.19	12.8	ZmAffx.955.1.A1_at	AI833505	-	-	8e-1	At2g47480	unknown protein	S.X.	H.G.	Please select
0.07	2.9	Zm.15777.1.A1_at	CD446878	-	-	6e-19	At5g49470	protein kinase family protein	S.X.	H.G.	Please select
0.06	2.3	Zm.15504.1.A1_at	CA404617	gamma-thionins family protein	-	4e+0	At1g80440	kelch repeat-containing F-box family protein	S.X.	H.G.	Please select
0.04	1.5	Zm.13857.1.S1_s_at	AF439726.1	methylenetetrahydrofolate dehydrogenase/methylenetetrahydrofolate cylcohydrolase /// methylenetetrahydrofolate dehydrogenase/methylenetetrahydrofolate cylcohydrolase isoform 1	-	3e-13	At3g12290	tetrahydrofolate dehydrogenase/cyclohydrolase, putative	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
4.7	96.5	GSM205368	B73xMo17 13 DAP endosperm tissue biological replicate 1	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
4.7	96.5	GSM205370	B73 13 DAP endosperm tissue biological replicate 2	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
4.7	96.5	GSM205371	Mo17xB73 13 DAP endosperm tissue biological replicate 2	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
4.6	96.4	GSM205366	B73 13 DAP endosperm tissue biological replicate 1	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
4.4	96.2	GSM205372	B73xMo17 13 DAP endosperm tissue biological replicate 2	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
3.9	95.7	GSM205374	B73 13 DAP endosperm tissue biological replicate 3	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
3.9	95.7	GSM205376	B73xMo17 13 DAP endosperm tissue biological replicate 3	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
3.8	95.5	GSM205365	Mo17 13 DAP endosperm tissue biological replicate 1	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
3.7	95.4	GSM205375	Mo17xB73 13 DAP endosperm tissue biological replicate 3	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP
3.6	95.2	GSM205369	Mo17 13 DAP endosperm tissue biological replicate 2	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.57	0	728	Zm.6513.3.S1_a_at	CF040598	-	-	1e-18	At2g35240	plastid developmental protein DAG, putative	C.G.	S.X.	Please select
0.57	0	728	Zm.6513.3.A1_at	CF040598	-	-	1e-18	At2g35240	plastid developmental protein DAG, putative	C.G.	S.X.	Please select
0.31	3e-53	208	Zm.10076.1.S1_at	BM379471	DAG protein	-	9e-15	At1g32580	plastid developmental protein DAG, putative	C.G.	S.X.	Please select
0.06	5e-27	121	Zm.6513.1.A1_at	CA401858	hypothetical protein LOC100273714	-	9e-3	At1g78530	protein kinase family protein	C.G.	S.X.	Please select
0.02	3e-3	42	Zm.4645.1.S1_at	AY104285.1	DAG protein	-	2e-17	At3g15000	-	C.G.	S.X.	Please select
0.02	2e-1	36	Zm.877.1.A1_at	BM078654	hypothetical protein LOC100276059	-	8e+0	At1g01750	ADF11 (ACTIN DEPOLYMERIZING FACTOR 11)	C.G.	S.X.	Please select
0.01	2e-1	36	Zm.5487.1.S1_at	CA403445	hypothetical protein LOC100274326	-	6e-2	At1g31660	-	C.G.	S.X.	Please select
0.01	2e-1	36	Zm.19117.1.A1_at	CF627329	hypothetical protein LOC100273986	-	2e-19	At4g01560	MEE49 (maternal effect embryo arrest 49)	C.G.	S.X.	Please select
0.01	2e-1	36	Zm.14322.1.A1_at	AY104923.1	-	-	5e-2	At2g03160	ASK19 (ARABIDOPSIS SKP1-LIKE 19)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.32	2e-15	83	Arabidopsis thaliana	At2g33430	817907	DAL1 (DIFFERENTIATION AND GREENING-LIKE 1)	F:molecular_function unknown;P:plastid organization, endonucleolytic cleavage of tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA);C:chloroplast;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.27	6e-69	262	Glycine max	Gma.8154.1.S1_at	AW310537	-	-	5e-35	At2g33430	DAL1 (DIFFERENTIATION AND GREENING-LIKE 1)	C.G.	S.X.	Please select
0.42	2e-109	395	Hordeum vulgare	Contig2392_at	Contig2392	-	-	1e-31	At2g33430	DAL1 (DIFFERENTIATION AND GREENING-LIKE 1)	C.G.	S.X.	Please select
0.42	1e-92	341	Oryza sativa	Os06g0116600	CR278699	-	Proteinase inhibitor, propeptide domain containingprotein	3e-8	At2g35240	plastid developmental protein DAG, putative	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.19	9e-25	115	Populus trichocarpa	PtpAffx.32368.1.S1_at	CV278073	hypothetical protein	-	7e-40	At2g33430	DAL1 (DIFFERENTIATION AND GREENING-LIKE 1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.39	8e-114	410	Triticum aestivum	Ta.7794.1.S1_x_at	BQ160699	-	-	7e-19	At2g33430	DAL1 (DIFFERENTIATION AND GREENING-LIKE 1)	C.G.	S.X.	Please select
0.38	2e-44	178	Vitis vinifera	1608717_at	CF568867	-	-	2e-63	At2g33430	DAL1 (DIFFERENTIATION AND GREENING-LIKE 1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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