Gene omics information

Query gene ID	Zm.6501.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.0	Zm.6501.1.A1_at	CD441294	-	-	1e-1	At2g46640	unknown protein	S.X.	H.G.	Please select
0.50	65.7	Zm.5012.1.A1_at	CK849978	auxin response factor 75	-	9e-1	At3g45050	unknown protein	S.X.	H.G.	Please select
0.33	36.0	Zm.15215.1.A1_at	BM332652	Hypothetical protein LOC100193843	-	1e+0	At5g22870	harpin-induced protein-related / HIN1-related / harpin-responsive protein-related	S.X.	H.G.	Please select
0.29	28.1	Zm.14852.1.A1_at	AI857162	-	-	2e-11	At3g57290	EIF3E (EUKARYOTIC TRANSLATION INITIATION FACTOR 3E)	S.X.	H.G.	Please select
0.29	28.1	Zm.18992.1.A1_at	CO521210	-	-	4e-1	At5g20370	serine-rich protein-related	S.X.	H.G.	Please select
0.19	12.8	Zm.617.1.A1_at	AF326505.1	tonoplast membrane integral protein ZmTIP4-1	-	4e-2	At2g36830	GAMMA-TIP (GAMMA TONOPLAST INTRINSIC PROTEIN)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
12.1	98.6	GSM202310	B73 19 day after pollination embryo tissue, biological replicate 1	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
11.6	98.6	GSM202320	B73 19 day after pollination embryo tissue, biological replicate 3	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
10.7	98.5	GSM202315	B73 19 day after pollination embryo tissue, biological replicate 2	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
10.3	98.4	GSM202318	B73xMo17 19 day after pollination embryo tissue, biological replicate 2	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
10.1	98.4	GSM202322	B73x Mo17 19 day after pollination embryo tissue, biological replicate 3	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
9.9	98.3	GSM202313	B73xMo17 19 day after pollination embryo tissue, biological replicate 1	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
9.5	98.3	GSM202309	Mo17 19 day after pollination embryo tissue, biological replicate 1	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
9.4	98.3	GSM202324	Mo17xB73 19 day after pollination embryo tissue, biological replicate 3	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
9.3	98.2	GSM202311	Mo17xB73 19 day after pollination embryo tissue, biological replicate 1	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
9.2	98.2	GSM202314	Mo17 19 day after pollination embryo tissue, biological replicate 2	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.47	0	728	Zm.4877.1.S1_at	CA401426	hypothetical protein LOC100193451	-	6e-55	At1g74960	FAB1 (FATTY ACID BIOSYNTHESIS 1)	C.G.	S.X.	Please select
0.34	7e-165	579	Zm.4877.2.A1_at	CD440272	Hypothetical protein LOC100193451	-	1e-44	At1g74960	FAB1 (FATTY ACID BIOSYNTHESIS 1)	C.G.	S.X.	Please select
0.34	7e-165	579	Zm.4877.2.S1_a_at	CD440272	hypothetical protein LOC100193451 /// hypothetical protein LOC100280304	-	1e-44	At1g74960	FAB1 (FATTY ACID BIOSYNTHESIS 1)	C.G.	S.X.	Please select
0.19	5e-36	151	Zm.7885.1.A1_at	AY106155.1	-	-	1e-49	At1g74960	FAB1 (FATTY ACID BIOSYNTHESIS 1)	C.G.	S.X.	Please select
0.02	5e-2	38	Zm.6820.1.A1_at	AI676986	thioredoxin	-	1e-5	At3g07090	unknown protein	C.G.	S.X.	Please select
0.02	5e-2	38	Zm.3464.1.A1_at	BM348739	6-phosphogluconolactonase	-	2e-4	At5g24400	emb2024 (embryo defective 2024)	C.G.	S.X.	Please select
0.02	5e-2	38	Zm.18372.1.S1_at	CO535024	hypothetical protein LOC100277380	-	2e-1	At3g58290	meprin and TRAF homology domain-containing protein / MATH domain-containing protein	C.G.	S.X.	Please select
0.01	8e-1	34	Zm.684.1.S1_at	AY029319.1	barley mlo defense gene homolog8	-	6e-8	At4g24250	MLO13 (MILDEW RESISTANCE LOCUS O 13)	C.G.	S.X.	Please select
0.01	8e-1	34	Zm.298.2.A1_at	AY109535.1	dxr protein	-	9e-41	At5g62790	DXR (1-DEOXY-D-XYLULOSE 5-PHOSPHATE REDUCTOISOMERASE)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	1e-1	38	Arabidopsis thaliana	At2g46640	819276	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	3e+0	34	Glycine max	PsAffx.psZO001iE10r_at	PsAffx.psZO001iE10r	-	-	4e+0	At4g17500	ATERF-1 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1)	C.G.	S.X.	Please select
0.21	1e-77	289	Hordeum vulgare	Contig6652_at	Contig6652	-	-	2e-61	At1g74960	FAB1 (FATTY ACID BIOSYNTHESIS 1)	C.G.	S.X.	Please select
0.22	1e-86	321	Oryza sativa	Os07g0616200	AK067275.1	-	Beta-ketoacyl-ACP synthase	7e-36	At1g74960	FAB1 (FATTY ACID BIOSYNTHESIS 1)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	2e-1	38	Populus trichocarpa	PtpAffx.116885.1.S1_at	CV131014	-	-	4e-1	At1g73010	phosphatase	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.20	2e-16	87	Triticum aestivum	TaAffx.58739.1.S1_at	CA616726	-	-	4e+0	At4g14165	F-box family protein-related	C.G.	S.X.	Please select
0.03	2e+0	32	Vitis vinifera	1611315_at	CF372467	hypothetical protein LOC100261906	-	6e-49	At4g14320	60S ribosomal protein L36a/L44 (RPL36aB)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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