Gene omics information

Query gene ID	Zm.6498.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.80	94.0	Zm.6498.1.A1_at	AI691894	-	-	3e-4	At1g10050	glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein	S.X.	H.G.	Please select
0.67	85.8	Zm.2376.6.S1_x_at	CF020992	cortical cell-delineating protein	-	7e-3	At5g63740	zinc finger protein-related	S.X.	H.G.	Please select
0.67	85.8	Zm.5479.1.A1_at	AY109635.1	-	-	3e-1	At1g71230	CSN5B (COP9-SIGNALOSOME 5B)	S.X.	H.G.	Please select
0.55	71.6	Zm.16449.1.A1_at	AY112082.1	-	-	1e+0	At3g29034	unknown protein	S.X.	H.G.	Please select
0.29	28.1	Zm.19106.1.A1_at	CO049276	-	-	7e+0	At4g08039	-	S.X.	H.G.	Please select
0.29	28.1	Zm.17743.1.S1_at	CK370833	-	-	2e+1	At3g42180	catalytic/ transferase, transferring glycosyl groups	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
20.5	99.3	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.3	99.2	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.6	99.1	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.9	99.0	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.0	98.9	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.4	98.9	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.2	98.8	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.5	98.4	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.2	98.4	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.2	96.9	GSM206325	Upper pulvinus 5 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	6e-1	34	Zm.12504.1.S1_at	AY105770.1	hypothetical protein LOC100274017	-	4e-3	At5g47720	acetyl-CoA C-acyltransferase, putative / 3-ketoacyl-CoA thiolase, putative	C.G.	S.X.	Please select
0.01	2e+0	32	Zm.6816.1.A1_at	AY104584.1	hypothetical protein LOC100274437	-	2e-1	At5g15820	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.01	2e+0	32	Zm.4030.1.A1_at	BM350062	-	-	1e+0	At1g17210	zinc ion binding	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.13727.1.A1_at	CK986131	NADPH quinone oxidoreductase 1	-	2e-6	At3g27890	NQR (NADPH:QUINONE OXIDOREDUCTASE)	C.G.	S.X.	Please select
0.01	9e+0	30	Zm.7389.1.S1_at	BM078172	-	-	3e-10	At1g60160	potassium transporter family protein	C.G.	S.X.	Please select
0.02	9e+0	30	Zm.6566.1.A1_at	AI621420	hypothetical protein LOC100191991	-	3e-5	At1g51690	ATB ALPHA	C.G.	S.X.	Please select
0.01	9e+0	30	Zm.6590.1.A1_at	AY108493.1	Hypothetical protein LOC100191320	-	4e-114	At5g20890	chaperonin, putative	C.G.	S.X.	Please select
0.01	9e+0	30	Zm.5915.1.S1_at	AW067416	hypothetical protein LOC100272832	-	3e+0	At5g40690	-	C.G.	S.X.	Please select
0.01	9e+0	30	Zm.5774.1.S1_at	CK370317	hypothetical protein LOC100280323	-	7e-5	At1g49050	aspartyl protease family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	3e-4	46	Arabidopsis thaliana	At1g10050	837540	glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein	Encodes a putative glycosyl hydrolase family 10 protein (xylanase).	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	7e+0	32	Glycine max	PsAffx.CL702Contig1_at	PsAffx.CL702Contig1	-	-	3e-1	At5g44550	integral membrane family protein	C.G.	S.X.	Please select
0.03	6e-1	34	Hordeum vulgare	EBes01_SQ002_D15_at	EBes01_SQ002_D15	-	-	5e-2	At1g15370	-	C.G.	S.X.	Please select
0.18	4e-82	305	Oryza sativa	Os07g0456700	AK100891.1	-	(1,4)-beta-xylan endohydrolase (EC 3.2.1.8)	1e-1	At1g58370	RXF12	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	3e-2	40	Populus trichocarpa	PtpAffx.114780.1.A1_at	CV244122	-	-	3e-5	At1g58370	RXF12	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.27	2e-55	216	Triticum aestivum	Ta.8240.1.S1_at	BQ161640	-	-	5e-9	At4g08160	glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein	C.G.	S.X.	Please select
0.03	1e-1	36	Vitis vinifera	1621309_at	CB345448	hypothetical protein LOC100260621	-	1e+0	At3g42570	peroxidase-related	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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