Gene omics information

Query gene ID	Zm.6478.1.S1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.57	75.1	Zm.6478.1.S1_at	AI692059	-	-	4e-21	At1g09800	tRNA pseudouridine synthase family protein	S.X.	H.G.	Please select
0.71	88.2	Zm.7342.1.A1_at	AF371279.1	legumin1	-	4e+0	At5g23100	unknown protein	S.X.	H.G.	Please select
0.32	33.4	Zm.12795.1.A1_at	BG267654	-	-	1e+0	At1g57590	carboxylesterase	S.X.	H.G.	Please select
0.22	16.9	Zm.7965.1.A1_at	BM074125	hypothetical protein LOC100277125	-	3e-1	At5g27440	unknown protein	S.X.	H.G.	Please select
0.21	15.5	Zm.3692.1.A1_at	BM332777	hypothetical protein LOC100278289	-	7e+0	At4g26670	mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein	S.X.	H.G.	Please select
0.18	11.6	Zm.17698.1.S1_at	CK369330	-	-	5e-1	At4g25130	peptide methionine sulfoxide reductase, putative	S.X.	H.G.	Please select
0.18	11.6	Zm.4238.1.A1_at	BM073006	cleavage and polyadenylation specificity factor, 100 kDa subunit	-	8e-1	At2g14282	SCRL18 (SCR-Like 18)	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
14.0	98.8	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.1	98.6	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.3	98.2	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.9	97.9	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.6	97.6	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.4	97.5	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.0	97.3	GSM202298	B73 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
5.6	97.1	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.3	96.9	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.4	96.2	GSM202310	B73 19 day after pollination embryo tissue, biological replicate 1	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.34	0	686	Zm.1387.1.S1_at	AW927977	pseudouridylate synthase	-	1e+0	At3g17140	invertase inhibitor-related	C.G.	S.X.	Please select
0.01	8e-2	38	Zm.14137.2.S1_at	CA402353	hypothetical protein LOC100193311	-	2e-35	At1g77130	PGSIP2 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 2)	C.G.	S.X.	Please select
0.02	5e+0	32	ZmAffx.586.1.A1_at	AI715014	-	-	3e+0	At4g24180	-	C.G.	S.X.	Please select
0.02	5e+0	32	ZmAffx.586.1.S1_at	AI715014	-	-	3e+0	At4g24180	-	C.G.	S.X.	Please select
0.01	5e+0	32	Zm.8412.1.A1_at	AY108596.1	-	-	7e-11	At1g48030	mtLPD1 (mitochondrial lipoamide dehydrogenase 1)	C.G.	S.X.	Please select
0.01	5e+0	32	Zm.8180.1.S1_at	CF006239	Starch synthase isoform zSTSII-1	-	8e-18	At3g01180	AtSS2 (starch synthase 2)	C.G.	S.X.	Please select
0.01	5e+0	32	Zm.705.1.S1_at	BG842406	-	-	4e-2	At1g04445	zinc finger (C2H2 type) family protein	C.G.	S.X.	Please select
0.01	5e+0	32	Zm.6906.1.A1_at	CD437056	-	-	3e-25	At3g14410	transporter-related	C.G.	S.X.	Please select
0.01	5e+0	32	Zm.6990.1.S1_at	AY105684.1	nuclear transcription factor Y subunit C-2	-	9e-9	At1g56170	NF-YC2 (NUCLEAR FACTOR Y, SUBUNIT C2)	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.07	4e-21	103	Arabidopsis thaliana	At1g09800	837510	tRNA pseudouridine synthase family protein	F:pseudouridine synthase activity;P:tRNA processing, pseudouridine synthesis;C:cellular_component unknown;BOMAP	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.09	4e-6	54	Glycine max	GmaAffx.73150.1.S1_at	BG789799	-	-	7e-53	At1g09800	tRNA pseudouridine synthase family protein	C.G.	S.X.	Please select
0.19	7e-21	101	Hordeum vulgare	Contig16782_at	Contig16782	-	-	1e+0	At1g27000	bZIP family transcription factor	C.G.	S.X.	Please select
0.53	0	801	Oryza sativa	Os12g0194800	AK101810.1	-	contains InterPro domain(s): IPR001406	3e-19	At1g09800	tRNA pseudouridine synthase family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.08	3e-10	67	Populus trichocarpa	Ptp.7821.1.S1_at	DN499723	-	-	2e-2	At1g09800	tRNA pseudouridine synthase family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.44	3e-102	373	Triticum aestivum	TaAffx.23144.1.S1_at	CD872578	-	-	2e+0	At2g45520	unknown protein	C.G.	S.X.	Please select
0.02	2e-1	36	Vitis vinifera	1622460_at	CD010264	-	-	9e-5	At3g25550	F-box family protein	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage