Gene omics information

Query gene ID	Zm.6454.1.A1_at
Gene name	PP1/PP2A phosphatases pleiotropic regulator PRL1
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	85.8	Zm.6454.1.A1_at	AY106137.1	PP1/PP2A phosphatases pleiotropic regulator PRL1	-	9e-29	At4g15900	PRL1 (PLEIOTROPIC REGULATORY LOCUS 1)	S.X.	H.G.	Please select
0.91	99.0	Zm.1482.2.A1_at	CO531725	hypothetical protein LOC100279242	-	7e+0	At5g17280	unknown protein	S.X.	H.G.	Please select
0.67	85.8	Zm.17707.1.A1_at	CK369771	-	-	4e-1	At5g28490	LSH1 (LIGHT-DEPENDENT SHORT HYPOCOTYLS 1)	S.X.	H.G.	Please select
0.67	85.8	Zm.8466.1.S1_at	BQ538688	macrophage migration inhibitory factor	-	4e-11	At5g01650	macrophage migration inhibitory factor family protein / MIF family protein	S.X.	H.G.	Please select
0.50	65.7	Zm.13763.1.A1_at	CF624710	hypothetical protein LOC100279845	-	2e-4	At4g38690	1-phosphatidylinositol phosphodiesterase-related	S.X.	H.G.	Please select
0.46	58.4	Zm.9975.1.A1_at	BM074697	-	-	7e-6	At5g64200	ATSC35	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
5.9	97.3	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.8	97.2	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.6	97.1	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.0	96.7	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.5	96.3	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.1	95.9	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.0	95.8	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.7	95.4	GSM205429	B73xMo17 19 DAP endosperm tissue biological replicate 2	GSE8278	Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
3.7	95.4	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.4	94.9	GSM205425	B73 19 DAP endosperm tissue biological replicate 2	GSE8278	Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	5e-7	56	Zm.6870.1.A1_at	BM379176	dihydroflavonol-4-reductase	-	2e-11	At4g16430	basic helix-loop-helix (bHLH) family protein	C.G.	S.X.	Please select
0.01	5e-7	56	Zm.11831.1.S1_a_at	CA401860	glucan endo-1,3-beta-glucosidase 6	-	7e-5	At5g58090	glycosyl hydrolase family 17 protein	C.G.	S.X.	Please select
0.01	2e-6	54	Zm.1725.1.S1_at	AW355926	-	-	2e-1	At1g30910	molybdenum cofactor sulfurase family protein	C.G.	S.X.	Please select
0.01	8e-6	52	Zm.8426.1.A1_at	BM347536	hypothetical protein LOC100216659	-	8e-1	At1g71691	GDSL-motif lipase/hydrolase family protein	C.G.	S.X.	Please select
0.01	8e-6	52	Zm.19067.1.S1_at	AY107493.1	hypothetical protein LOC100279588	-	3e+0	At5g20810	auxin-responsive protein, putative / small auxin up RNA (SAUR_B)	C.G.	S.X.	Please select
0.02	8e-6	52	Zm.17544.1.A1_at	CF004915	thylakoid membrane phosphoprotein 14 kda	-	3e-2	At2g46820	PSI-P (PHOTOSYSTEM I P SUBUNIT)	C.G.	S.X.	Please select
0.02	8e-6	52	Zm.14820.1.S1_at	AY106101.1	-	-	5e+0	At5g14602	unknown protein	C.G.	S.X.	Please select
0.01	8e-6	52	Zm.14710.1.S1_at	AY232823.1	nucleosome/chromatin assembly factor group A	-	1e-5	At4g26110	NAP1	C.G.	S.X.	Please select
0.02	8e-6	52	Zm.14265.1.A1_at	AY105423.1	hypothetical protein LOC100272919	-	5e-53	At1g04480	60S ribosomal protein L23 (RPL23A)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.35	9e-29	129	Arabidopsis thaliana	At4g15900	827272	PRL1 (PLEIOTROPIC REGULATORY LOCUS 1)	Mutations confer hypersensitivity to glucose and sucrose and augments sensitivity to cytokinin, ethylene, ABA and auxin. Encodes a nuclear WD40 protein that is imported into the nucleus. Essential for plant innate immunity. Interacts with MOS4 and AtCDC5. It is also predicted to have two DWD motifs. It can bind to DDB1a in Y2H assays, and DDB1b in co-IP assays, and may be involved in the formation of a CUL4-based E3 ubiquitin ligase, and may affect the stability of AKIN10.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.26	9e-36	153	Glycine max	GmaAffx.90608.1.S1_at	CF806333	-	-	5e-102	At4g15900	PRL1 (PLEIOTROPIC REGULATORY LOCUS 1)	C.G.	S.X.	Please select
0.24	2e-80	299	Hordeum vulgare	Contig17157_at	Contig17157	-	-	2e-14	At4g15900	PRL1 (PLEIOTROPIC REGULATORY LOCUS 1)	C.G.	S.X.	Please select
0.51	0	991	Oryza sativa	Os03g0339100	AK111641.1	-	PP1/PP2A phosphatases pleiotropic regulator PRL2	2e-17	At4g15900	PRL1 (PLEIOTROPIC REGULATORY LOCUS 1)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.30	6e-34	147	Populus trichocarpa	Ptp.6543.1.S1_s_at	CV233854	hypothetical protein	-	2e-121	At4g15900	PRL1 (PLEIOTROPIC REGULATORY LOCUS 1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.51	4e-167	589	Triticum aestivum	Ta.6105.1.S1_at	CK192946	-	-	3e-22	At4g15900	PRL1 (PLEIOTROPIC REGULATORY LOCUS 1)	C.G.	S.X.	Please select
0.01	8e-2	38	Vitis vinifera	1621679_at	CB003331	similar to Os11g0657300	-	4e-22	At2g14285	-	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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