Gene omics information

Query gene ID	Zm.6439.2.A1_at
Gene name	eucaryotic initiation factor7
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	85.8	Zm.6439.2.A1_at	AI881500	eucaryotic initiation factor7	-	7e-14	At5g35620	LSP1 (LOSS OF SUSCEPTIBILITY TO POTYVIRUS 1)	S.X.	H.G.	Please select
0.80	94.0	Zm.3707.1.A1_at	AY107773.1	vacuolar cation/proton exchanger 2	-	1e-4	At3g13320	CAX2 (CATION EXCHANGER 2)	S.X.	H.G.	Please select
0.77	92.1	Zm.13202.1.A1_at	CA403491	hypothetical protein LOC100273129	-	1e-8	At1g56590	clathrin adaptor complexes medium subunit family protein	S.X.	H.G.	Please select
0.61	79.5	Zm.737.2.A1_at	AI746142	-	-	4e-6	At5g60360	AALP (Arabidopsis aleurain-like protease)	S.X.	H.G.	Please select
0.46	58.4	Zm.2602.1.S1_at	AY109922.1	hypothetical protein LOC100217277	-	1e-2	At5g24340	3'-5' exonuclease domain-containing protein	S.X.	H.G.	Please select
0.36	41.3	Zm.5729.1.A1_at	AI637125	peptidoglycan binding domain containing protein	-	3e-23	At4g13670	PTAC5 (PLASTID TRANSCRIPTIONALLY ACTIVE5)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
5.6	97.1	GSM323171	Zm_SG200Dpep1_24hpi_II	GSE12892	Maize gene expression during infection with Ustilago maydis strain SG200Dpep1
4.9	96.7	GSM253254	ZM_24h_SG200_3inf_II	GSE10023	Maize gene expression during infection with Ustilago maydis
4.8	96.6	GSM253244	ZM_12h_Mock_3inf_I	GSE10023	Maize gene expression during infection with Ustilago maydis
4.8	96.6	GSM253245	ZM_12h_Mock_3inf_II	GSE10023	Maize gene expression during infection with Ustilago maydis
4.8	96.6	GSM253249	ZM_12h_SG200_3inf_II	GSE10023	Maize gene expression during infection with Ustilago maydis
4.7	96.5	GSM253252	ZM_24h_Mock_3inf_III	GSE10023	Maize gene expression during infection with Ustilago maydis
4.7	96.5	GSM253255	ZM_24h_SG200_3inf_III	GSE10023	Maize gene expression during infection with Ustilago maydis
4.6	96.4	GSM253248	ZM_12h_SG200_3inf_I	GSE10023	Maize gene expression during infection with Ustilago maydis
4.5	96.3	GSM375797	Deep-sowing 10d treatment UCZ, biological rep2	GSE15048	Gibberellin-induced gene expression in maize mesocotyl under deep-sowing condition
4.4	96.2	GSM253250	ZM_24h_Mock_3inf_I	GSE10023	Maize gene expression during infection with Ustilago maydis

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.38	0	737	Zm.6439.1.A1_at	AF076955.1	eucaryotic initiation factor7	-	3e-12	At5g35620	LSP1 (LOSS OF SUSCEPTIBILITY TO POTYVIRUS 1)	C.G.	S.X.	Please select
0.38	0	737	Zm.6439.1.A1_a_at	AF076955.1	eucaryotic initiation factor7 /// eukaryotic translation initiation factor 4E-2	-	3e-12	At5g35620	LSP1 (LOSS OF SUSCEPTIBILITY TO POTYVIRUS 1)	C.G.	S.X.	Please select
0.19	2e-40	167	Zm.2592.1.S1_at	BM351079	hypothetical protein LOC100191248	-	1e-5	At5g20720	CPN20 (CHAPERONIN 20)	C.G.	S.X.	Please select
0.04	4e-4	46	Zm.381.1.A1_at	AF076954.1	eucaryotic initiation factor6	-	4e-17	At1g29590	eukaryotic translation initiation factor 4E, putative / eIF-4E, putative / eIF4E, putative / mRNA cap-binding protein, putative	C.G.	S.X.	Please select
0.06	2e-3	44	Zm.1183.1.A1_at	BG841428	hypothetical protein LOC100216904	-	6e-1	At5g20720	CPN20 (CHAPERONIN 20)	C.G.	S.X.	Please select
0.01	3e-2	40	Zm.11687.1.S1_at	AY110264.1	eukaryotic translation initiation factor 4E-1	-	2e-6	At4g18040	EIF4E (EUKARYOTIC TRANSLATION INITATION FACTOR 4E)	C.G.	S.X.	Please select
0.01	4e-1	36	ZmAffx.415.1.A1_at	AI670503	-	-	1e+1	At5g67450	AZF1 (ARABIDOPSIS ZINC-FINGER PROTEIN 1)	C.G.	S.X.	Please select
0.01	4e-1	36	ZmAffx.415.1.S1_at	AI670503	-	-	1e+1	At5g67450	AZF1 (ARABIDOPSIS ZINC-FINGER PROTEIN 1)	C.G.	S.X.	Please select
0.01	4e-1	36	ZmAffx.1027.1.A1_at	AI881638	-	-	8e-1	At1g01100	60S acidic ribosomal protein P1 (RPP1A)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.12	7e-14	79	Arabidopsis thaliana	At5g35620	833534	LSP1 (LOSS OF SUSCEPTIBILITY TO POTYVIRUS 1)	Cap-binding protein, binds to the 5' cap structure of nuclear-encoded mRNAs. Mutant is resistant to potyvirus infection.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.08	9e-5	50	Glycine max	GmaAffx.10709.1.S1_at	BE657216	-	-	4e-14	At5g35620	LSP1 (LOSS OF SUSCEPTIBILITY TO POTYVIRUS 1)	C.G.	S.X.	Please select
0.33	6e-56	218	Hordeum vulgare	Contig10790_at	Contig10790	-	-	5e-1	At5g16090	-	C.G.	S.X.	Please select
0.27	4e-134	480	Oryza sativa	Os10g0467600	U34598.1	-	Eukaryotic translation initiation factor 4E-2(eIF4E-2) (eIF-4E-2) (mRNA cap-binding protein)(eIF-(iso)4F 25 kDa subunit) (eIF-(iso)4F p28 subunit)	1e-11	At5g35620	LSP1 (LOSS OF SUSCEPTIBILITY TO POTYVIRUS 1)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.13	6e-12	73	Populus trichocarpa	PtpAffx.121254.1.A1_at	CV249707	hypothetical protein	-	6e-21	At5g35620	LSP1 (LOSS OF SUSCEPTIBILITY TO POTYVIRUS 1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.34	0	676	Triticum aestivum	Ta.26738.1.A1_at	CD491007	-	-	3e-2	At5g20720	CPN20 (CHAPERONIN 20)	C.G.	S.X.	Please select
0.08	3e-13	75	Vitis vinifera	1617268_at	CF205684.1	hypothetical protein LOC100259631	-	4e-13	At5g35620	LSP1 (LOSS OF SUSCEPTIBILITY TO POTYVIRUS 1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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