Gene omics information

Query gene ID	Zm.6435.1.A1_at
Gene name	hypothetical protein LOC100217154
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.71	88.2	Zm.6435.1.A1_at	BM078602	hypothetical protein LOC100217154	-	1e-5	At2g22370	unknown protein	S.X.	H.G.	Please select
0.67	85.8	Zm.327.1.S1_at	AB042270.1	histidine kinase 1	-	3e-14	At2g01830	WOL (WOODEN LEG)	S.X.	H.G.	Please select
0.63	81.1	Zm.13228.1.S1_at	CA452580	LHT1	-	5e+0	At4g17585	unknown protein	S.X.	H.G.	Please select
0.58	75.1	ZmAffx.1051.1.S1_at	AI881809	hypothetical protein LOC100272557	-	2e-1	At3g01790	ribosomal protein L13 family protein	S.X.	H.G.	Please select
0.56	74.4	Zm.15242.1.A1_at	BM340075	-	-	1e+1	At3g16712	unknown protein	S.X.	H.G.	Please select
0.50	65.7	Zm.8311.2.A1_a_at	BM073622	-	-	4e+0	At4g23090	unknown protein	S.X.	H.G.	Please select
0.47	59.9	ZmAffx.89.1.A1_at	AI665353	hypothetical protein LOC100277768	-	1e+1	At5g20560	beta-1,3-glucanase, putative	S.X.	H.G.	Please select
0.45	56.4	Zm.2805.1.A1_at	AW352682	hypothetical protein LOC100274443	-	5e+0	At4g13266	unknown protein	S.X.	H.G.	Please select
0.45	56.4	Zm.4171.1.A1_at	BG841769	isoamyl acetate-hydrolyzing esterase	-	3e+0	At1g69190	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase/ dihydropteroate synthase	S.X.	H.G.	Please select
0.44	55.7	Zm.6275.1.S1_a_at	AF540907.1	benzoxazin6	-	7e-1	At1g06640	2-oxoglutarate-dependent dioxygenase, putative	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
12.0	98.6	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.5	98.6	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.2	98.5	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.0	98.5	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.4	98.4	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.1	98.2	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.6	98.1	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.8	97.9	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.9	97.7	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.8	93.5	GSM202298	B73 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	3e-7	56	Zm.4860.1.S1_at	CD437324	mRNA decapping enzyme 2	-	9e-1	At5g13570	DCP2 (DECAPPING 2)	C.G.	S.X.	Please select
0.05	7e-5	48	Zm.9881.1.A1_at	BM347704	hypothetical protein LOC100273660	-	3e-1	At4g17245	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.01	1e-3	44	Zm.15810.1.S1_at	BU098966	-	-	4e-3	At3g52660	RNA recognition motif (RRM)-containing protein	C.G.	S.X.	Please select
0.02	4e-3	42	Zm.7925.1.A1_at	BM080435	-	-	1e+0	At1g58070	unknown protein	C.G.	S.X.	Please select
0.02	2e-2	40	Zm.7768.1.A1_s_at	BG836144	hypothetical protein LOC100276601	-	4e-3	At5g23950	C2 domain-containing protein	C.G.	S.X.	Please select
0.02	2e-2	40	Zm.7768.1.A1_at	BG836144	-	-	4e-3	At5g23950	C2 domain-containing protein	C.G.	S.X.	Please select
0.01	2e-2	40	Zm.2520.1.A1_at	AW400289	hypothetical protein LOC100191754	-	5e-21	At3g49680	BCAT3 (BRANCHED-CHAIN AMINOTRANSFERASE 3)	C.G.	S.X.	Please select
0.01	2e-2	40	Zm.15448.1.S1_at	CD448349	plastidic phosphate translocator-like protein1	-	4e-24	At4g32390	phosphate translocator-related	C.G.	S.X.	Please select
0.02	7e-2	38	Zm.9649.1.A1_at	BM337167	hypothetical protein LOC100277264	-	1e+0	At1g43720	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.08	1e-5	52	Arabidopsis thaliana	At2g22370	816769	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	2e-1	38	Glycine max	PsAffx.psHB031xA08f_s_at	PsAffx.psHB031xA08f	-	-	4e+0	At4g39917	LCR45 (Low-molecular-weight cysteine-rich 45)	C.G.	S.X.	Please select
0.44	1e-74	280	Hordeum vulgare	Contig23389_at	Contig23389	-	-	2e-2	At2g22370	unknown protein	C.G.	S.X.	Please select
0.46	2e-98	361	Oryza sativa	Os02g0193900	AK069578.1	-	Conserved hypothetical protein	2e-10	At2g22370	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	2e-4	48	Populus trichocarpa	Ptp.2112.1.S1_at	CV273029	hypothetical protein	-	8e-31	At2g22370	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.27	6e-29	129	Triticum aestivum	TaAffx.8051.1.S1_at	BQ482848	-	-	9e-9	At2g22370	unknown protein	C.G.	S.X.	Please select
0.04	1e-5	50	Vitis vinifera	1615066_at	BQ792737	hypothetical protein LOC100250557	-	7e-8	At2g22370	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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