Gene omics information

Query gene ID	Zm.6422.1.A1_at
Gene name	INDETERMINATE-related protein 1
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	85.8	Zm.6422.1.A1_at	AY108637.1	INDETERMINATE-related protein 1	-	5e+0	At3g11280	myb family transcription factor	S.X.	H.G.	Please select
0.65	82.1	Zm.720.1.A1_at	AY104806.1	hypothetical protein LOC100273239	-	2e+0	At4g23870	unknown protein	S.X.	H.G.	Please select
0.60	77.8	Zm.5275.1.A1_at	CF011385	hypothetical protein LOC100192527	-	5e-9	At1g13640	phosphatidylinositol 3- and 4-kinase family protein	S.X.	H.G.	Please select
0.59	76.1	Zm.8584.1.A1_at	BM340099	-	-	4e+0	At2g31430	invertase/pectin methylesterase inhibitor family protein	S.X.	H.G.	Please select
0.48	61.3	Zm.8233.3.S1_a_at	BQ294345	hypothetical protein LOC100194283 /// splicing factor, arginine/serine-rich 7	-	5e-7	At4g31580	SRZ-22	S.X.	H.G.	Please select
0.45	56.4	Zm.5578.2.S1_a_at	BM380773	hypothetical protein LOC100193656	-	1e-4	At5g48335	unknown protein	S.X.	H.G.	Please select
0.44	55.7	Zm.8232.1.A1_at	CF623743	hypothetical protein LOC100191804	-	4e-1	At1g02405	proline-rich family protein	S.X.	H.G.	Please select
0.42	51.3	Zm.730.2.A1_a_at	AW017698	hypothetical protein LOC100191862 /// hypothetical protein LOC100193447	-	8e-31	At3g46440	UXS5	S.X.	H.G.	Please select
0.42	51.3	Zm.8850.1.A1_at	CO533203	hypothetical protein LOC100272618	-	4e-2	At3g17940	aldose 1-epimerase family protein	S.X.	H.G.	Please select
0.41	49.7	Zm.5142.1.A1_at	AI603769	hypothetical protein LOC100274396	-	1e-7	At2g47020	peptide chain release factor, putative	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
20.1	99.3	GSM253280	ZM_8d_SG200_3Alu_I	GSE10023	Maize gene expression during infection with Ustilago maydis
13.2	98.8	GSM253281	ZM_8d_SG200_3Alu_II	GSE10023	Maize gene expression during infection with Ustilago maydis
11.7	98.6	GSM253282	ZM_8d_SG200_3Alu_III	GSE10023	Maize gene expression during infection with Ustilago maydis
9.5	98.3	GSM253276	ZM_8d_Mock_3inf_III	GSE10023	Maize gene expression during infection with Ustilago maydis
8.4	98.1	GSM253275	ZM_8d_Mock_3inf_II	GSE10023	Maize gene expression during infection with Ustilago maydis
7.9	97.9	GSM253263	ZM_4d_Mock_3inf_II	GSE10023	Maize gene expression during infection with Ustilago maydis
7.7	97.9	GSM253274	ZM_8d_Mock_3inf_I	GSE10023	Maize gene expression during infection with Ustilago maydis
7.6	97.9	GSM253262	ZM_4d_Mock_3inf_I	GSE10023	Maize gene expression during infection with Ustilago maydis
7.3	97.8	GSM320445	protocol: mRNA - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.2	97.8	GSM253270	ZM_4.5d_Mock_3inf_III	GSE10023	Maize gene expression during infection with Ustilago maydis

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	1e-1	36	Zm.13827.1.S1_at	CF014663	-	-	2e-9	At5g11380	DXPS3 (1-deoxy-D-xylulose 5-phosphate synthase 3)	C.G.	S.X.	Please select
0.03	5e-1	34	Zm.17331.1.A1_at	CF631030	-	-	1e-3	At5g51640	YLS7	C.G.	S.X.	Please select
0.02	5e-1	34	Zm.15352.3.S1_at	CF919882	hypothetical protein LOC100273764	-	5e-11	At3g12170	DNAJ heat shock N-terminal domain-containing protein	C.G.	S.X.	Please select
0.01	5e-1	34	Zm.1416.1.S1_at	CK787234	mitochondrial 2-oxoglutarate/malate carrier protein	-	1e-2	At5g09470	mitochondrial substrate carrier family protein	C.G.	S.X.	Please select
0.03	2e+0	32	Zm.4807.1.A1_at	CO518291	hypothetical protein LOC100273970	-	1e+0	At3g60286	unknown protein	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.4472.1.A1_at	BG266227	hypothetical protein LOC100194169	-	2e+0	At5g50175	unknown protein	C.G.	S.X.	Please select
0.01	2e+0	32	Zm.4008.1.A1_at	CF624764	-	-	3e-44	At1g65540	calcium-binding EF hand family protein	C.G.	S.X.	Please select
0.01	2e+0	32	Zm.344.1.A1_at	AI834592	OCL4 protein	-	2e-6	At5g46880	HB-7 (HOMEOBOX-7)	C.G.	S.X.	Please select
0.02	2e+0	32	Zm.18939.1.A1_at	CF631171	-	-	3e+0	At5g26622	beta-galactosidase	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	5e+0	32	Arabidopsis thaliana	At3g11280	820299	myb family transcription factor	Putative transcription factors interacting with the gene product of VHA-B1 (vacuolar ATPase subunit B1; as shown through yeast two-hybrid assay).	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	4e-1	36	Glycine max	GmaAffx.70691.1.S1_at	AI736289	-	-	2e-4	At4g27280	calcium-binding EF hand family protein	C.G.	S.X.	Please select
0.05	2e-7	56	Hordeum vulgare	Contig17972_at	Contig17972	-	-	2e+0	At3g28990	unknown protein	C.G.	S.X.	Please select
0.06	3e-9	63	Oryza sativa	Os08g0554400	AK101181.1	-	Zn-finger, C2H2 type domain containing protein	4e-25	At1g14580	zinc finger (C2H2 type) family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	2e+0	34	Populus trichocarpa	PtpAffx.113981.1.A1_at	CV276195	hypothetical protein	-	4e-8	At1g67030	ZFP6 (ZINC FINGER PROTEIN 6)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.06	5e-3	42	Triticum aestivum	Ta.19139.1.A1_at	CA647789	-	-	2e+1	At5g12323	unknown protein	C.G.	S.X.	Please select
0.03	2e-2	38	Vitis vinifera	1621607_at	CF204364.1	-	-	1e-1	At5g15260	structural constituent of ribosome	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage