CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Zm.6418.1.S1_at

Gene name hypothetical protein LOC100216693

Organism Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 99.0 Zm.6418.1.S1_at AY108322.1 hypothetical protein LOC100216693 - 2e-1 At3g44580 unknown protein S.X. H.G.
0.71 88.2 Zm.1546.3.A1_x_at CK369824 - - 1e-6 At1g15270 - S.X. H.G.
0.67 85.8 Zm.5388.1.S1_at AW453245 hypothetical protein LOC100193632 - 6e-23 At3g09180 unknown protein S.X. H.G.
0.57 75.1 ZmAffx.1097.1.S1_at AW120085 - - 1e+1 At5g25770 unknown protein S.X. H.G.
0.46 58.4 Zm.18590.1.A1_at AW562614 exostosin-like - 1e+0 At5g22930 unknown protein S.X. H.G.
0.43 52.8 Zm.4006.1.A1_at BQ539204 hypothetical protein LOC100216950 - 2e+0 At4g22530 embryo-abundant protein-related S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
5.4 97.0 GSM162266 Wild type 2 with array type maize from Affymetrix GSE7030 Phenotypic and molecular characterisation of a novel Bt2 allele in maize
4.8 96.6 GSM206288 Upper pulvinus 2 min total RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
4.6 96.4 GSM206294 Lower pulvinus 2 min total RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
4.4 96.2 GSM202304 B73 immature ear tissue, biological replicate 3 GSE8176 Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
4.4 96.2 GSM202295 Mo17xB73 immature ear tissue, biological replicate 1 GSE8176 Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
4.2 96.0 GSM206305 Right pulvinus control polysomal RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
4.0 95.8 GSM206295 Lower pulvinus 5 min total RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
4.0 95.8 GSM202303 Mo17 immature ear tissue, biological replicate 3 GSE8176 Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
3.9 95.7 GSM162267 Mutant 1 with array type maize from Affymetrix GSE7030 Phenotypic and molecular characterisation of a novel Bt2 allele in maize
3.8 95.5 GSM206289 Upper pulvinus 5 min total RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.44 4e-127 454 Zm.9365.1.A1_at BM268346 transposon protein - 1e-1 At1g29520 AWPM-19-like membrane family protein C.G. S.X.
0.39 3e-109 395 Zm.3698.1.A1_at AI834031 transposon protein - 4e+0 At5g06910 ATJ6 (Arabidopsis J-domain protein 6) C.G. S.X.
0.03 1e-3 44 Zm.17671.1.S1_at CK369711 - - 3e+0 At2g39510 nodulin MtN21 family protein C.G. S.X.
0.01 1e+0 34 Zm.5511.1.A1_at CO528493 - - 5e-1 At2g45530 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.01 1e+0 34 Zm.5481.1.A1_at CO534121 - - 7e-2 At5g47455 unknown protein C.G. S.X.
0.01 1e+0 34 Zm.3239.1.A1_at AY105932.1 xaa-Pro dipeptidase - 5e-23 At4g29490 aminopeptidase/ manganese ion binding C.G. S.X.
0.01 1e+0 34 Zm.14125.1.A1_at CO533246 hypothetical protein LOC100273725 - 3e-4 At3g51280 male sterility MS5, putative C.G. S.X.
0.01 5e+0 32 Zm.6861.1.A1_at U83625.1 MEK homolog1 - 1e-24 At5g56580 MKK6 (MAP KINASE KINASE 6) C.G. S.X.
0.01 5e+0 32 Zm.6037.1.S1_a_at CA403590 hypothetical protein LOC100272475 - 2e-14 At3g56150 EIF3C (EUKARYOTIC TRANSLATION INITIATION FACTOR 3C) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 2e-1 38 Arabidopsis thaliana At3g44580 823583 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P - - - C.G. S.X.
0.02 1e+0 36 Glycine max GmaAffx.91338.1.S1_at CF807063 - - 4e-12 At1g73010 phosphatase C.G. S.X.
0.32 1e-117 422 Hordeum vulgare Contig6422_at Contig6422 - - 3e-1 At2g34900 IMB1 (IMBIBITION-INDUCIBLE 1) C.G. S.X.
0.26 8e-64 246 Oryza sativa Os05g0583200 AK102230.1 - BED finger domain containing protein 4e-1 At5g63740 zinc finger protein-related C.G. S.X.
0.04 1e-3 46 Populus trichocarpa PtpAffx.225089.1.S1_at pmrna44186 hypothetical protein - 6e-2 At4g15550 IAGLU (INDOLE-3-ACETATE BETA-D-GLUCOSYLTRANSFERASE) C.G. S.X.
0.29 1e-48 194 Triticum aestivum TaAffx.117362.1.S1_at BQ606032 - - 1e+0 At2g03710 SEP4 (SEPALLATA 4) C.G. S.X.
0.03 3e-3 42 Vitis vinifera 1621862_at CF510931 hypothetical protein LOC100267900 - 2e+0 At1g15930 40S ribosomal protein S12 (RPS12A) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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