Gene omics information

Query gene ID	Zm.6357.1.S1_at
Gene name	catalase1
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.0	Zm.6357.1.S1_at	AY103601.1	catalase1	-	8e-85	At4g35090	CAT2 (CATALASE 2)	S.X.	H.G.	Please select
0.77	92.1	Zm.6351.1.S1_at	AY105055.1	hypothetical protein LOC100277708	-	5e-1	At5g57685	AtGDU3 (Arabidopsis thaliana GLUTAMINE DUMPER 3)	S.X.	H.G.	Please select
0.71	88.2	Zm.13932.1.S1_x_at	X63871.1	phosphoenolpyruvate carboxylase /// phosphoenolpyruvate carboxylase1 /// phosphoenolpyruvate carboxylase	-	3e-4	At3g42628	phosphoenolpyruvate carboxylase-related / PEP carboxylase-related	S.X.	H.G.	Please select
0.67	85.8	Zm.1207.1.A1_at	CO525598	growth-regulating factor 11-like	-	6e+0	At5g15948	CPuORF10 (Conserved peptide upstream open reading frame 10)	S.X.	H.G.	Please select
0.44	55.7	Zm.15578.1.A1_at	CD448284	-	-	8e+0	At5g61310	cytochrome c oxidase subunit Vc, putative / COX5C, putative	S.X.	H.G.	Please select
0.42	51.3	ZmAffx.1108.1.A1_at	AW216343	hypothetical protein LOC100191835	-	3e+0	At4g12810	F-box family protein	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
4.5	96.3	GSM206299	Left pulvinus control polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
4.5	96.3	GSM206306	Lower pulvinus 2 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
4.5	96.3	GSM162267	Mutant 1 with array type maize from Affymetrix	GSE7030	Phenotypic and molecular characterisation of a novel Bt2 allele in maize
4.2	96.0	GSM206309	Lower pulvinus 30 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
4.2	96.0	GSM206302	Upper pulvinus 15 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
4.1	95.9	GSM206305	Right pulvinus control polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
3.9	95.7	GSM206310	Lower pulvinus 60 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
3.8	95.5	GSM206308	Lower pulvinus 15 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
3.5	95.1	GSM206330	Lower pulvinus 2 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
3.5	95.1	GSM206300	Upper pulvinus 2 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.13	3e-76	286	Zm.6357.3.S1_a_at	AI782974	catalase1	-	8e-14	At4g35090	CAT2 (CATALASE 2)	C.G.	S.X.	Please select
0.13	3e-76	286	Zm.6357.3.A1_at	AI782974	Catalase1	-	8e-14	At4g35090	CAT2 (CATALASE 2)	C.G.	S.X.	Please select
0.23	1e-10	67	Zm.157.1.S1_at	AY107763.1	catalase2	-	3e-22	At4g35090	CAT2 (CATALASE 2)	C.G.	S.X.	Please select
0.07	5e-4	46	Zm.3066.1.A1_at	M33103.1	hypothetical protein LOC100280011	-	7e-5	At1g20620	CAT3 (CATALASE 3)	C.G.	S.X.	Please select
0.01	5e-1	36	Zm.919.1.S1_at	BE509982	-	-	3e+0	At3g58850	PAR2 (PHY RAPIDLY REGULATED 2)	C.G.	S.X.	Please select
0.01	5e-1	36	Zm.6553.1.A1_at	BG265813	-	-	7e-51	At1g80070	SUS2 (ABNORMAL SUSPENSOR 2)	C.G.	S.X.	Please select
0.01	5e-1	36	Zm.6077.1.A1_at	CO532924	-	-	6e-19	At2g31810	acetolactate synthase small subunit, putative	C.G.	S.X.	Please select
0.01	2e+0	34	ZmAffx.593.1.A1_at	AI715021	-	-	2e-1	At3g28630	-	C.G.	S.X.	Please select
0.01	2e+0	34	ZmAffx.593.1.S1_at	AI715021	-	-	2e-1	At3g28630	-	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.52	8e-85	315	Arabidopsis thaliana	At4g35090	829661	CAT2 (CATALASE 2)	Encodes a peroxisomal catalase, highly expressed in bolts and leaves. mRNA expression patterns show circadian regulation with mRNA levels being high in the subjective early morning. Loss of function mutations have increased H2O2 levels and increased H2O2 sensitivity. Mutants accumulate more toxic ions yet show decreased sensitivity to Li+. This decreased sensitivity is most likely due to an insensitivity to ethylene. Note that in Queval et al. (2007) Plant Journal, 52(4):640, SALK_057998 is named as cat2-1, SALK_076998 is named as cat2-2; in Bueso et al. (2007) Plant Journal, 52(6):1052, SALK_076998 is named as cat2-1. TAIR has adopted the nomenclature consistent with that in Bueso et al. (2007) after consultation with the authors: SALK_076998 (cat2-1), SALK_057998 (cat2-2).	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.37	1e-53	212	Glycine max	Gma.587.1.S1_at	AF035252.1	catalase	-	4e-117	At4g35090	CAT2 (CATALASE 2)	C.G.	S.X.	Please select
0.28	3e-15	83	Hordeum vulgare	Contig1846_s_at	Contig1846	-	-	9e-29	At4g35090	CAT2 (CATALASE 2)	C.G.	S.X.	Please select
0.59	0	1509	Oryza sativa	Os06g0727200	D26484.1	-	-	5e-83	At1g20630	CAT1 (CATALASE 1)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.46	1e-161	571	Populus trichocarpa	PtpAffx.201549.1.S1_at	pmrna3044	catalase	-	0	At4g35090	CAT2 (CATALASE 2)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.64	0	1298	Triticum aestivum	Ta.28032.1.S1_at	X94352.1	catalase	-	3e-90	At4g35090	CAT2 (CATALASE 2)	C.G.	S.X.	Please select
0.50	6e-95	347	Vitis vinifera	1610871_s_at	CD716100	hypothetical protein LOC100244516	-	0	At4g35090	CAT2 (CATALASE 2)	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage