Gene omics information

Query gene ID	Zm.6351.1.S1_at
Gene name	hypothetical protein LOC100277708
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.74	90.3	Zm.6351.1.S1_at	AY105055.1	hypothetical protein LOC100277708	-	5e-1	At5g57685	AtGDU3 (Arabidopsis thaliana GLUTAMINE DUMPER 3)	S.X.	H.G.	Please select
0.80	94.0	ZmAffx.123.1.S1_at	AI665878	-	-	8e-1	At5g15200	40S ribosomal protein S9 (RPS9B)	S.X.	H.G.	Please select
0.75	90.8	Zm.13932.1.A1_at	X63871.1	phosphoenolpyruvate carboxylase	-	3e-4	At3g42628	phosphoenolpyruvate carboxylase-related / PEP carboxylase-related	S.X.	H.G.	Please select
0.75	90.8	Zm.6357.1.S1_at	AY103601.1	catalase1	-	8e-85	At4g35090	CAT2 (CATALASE 2)	S.X.	H.G.	Please select
0.71	88.2	Zm.1207.1.A1_at	CO525598	growth-regulating factor 11-like	-	6e+0	At5g15948	CPuORF10 (Conserved peptide upstream open reading frame 10)	S.X.	H.G.	Please select
0.67	85.8	ZmAffx.1108.1.A1_at	AW216343	hypothetical protein LOC100191835	-	3e+0	At4g12810	F-box family protein	S.X.	H.G.	Please select
0.63	81.1	Zm.5897.1.A1_at	CA404128	hypothetical protein LOC100193663	-	9e-38	At3g47520	MDH (MALATE DEHYDROGENASE)	S.X.	H.G.	Please select
0.46	58.4	Zm.15578.1.A1_at	CD448284	-	-	8e+0	At5g61310	cytochrome c oxidase subunit Vc, putative / COX5C, putative	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
2.8	93.5	GSM323172	Zm_SG200Dpep1_24hpi_III	GSE12892	Maize gene expression during infection with Ustilago maydis strain SG200Dpep1
2.7	93.2	GSM253246	ZM_12h_Mock_3inf_III	GSE10023	Maize gene expression during infection with Ustilago maydis
2.7	93.2	GSM323170	Zm_SG200Dpep1_24hpi_I	GSE12892	Maize gene expression during infection with Ustilago maydis strain SG200Dpep1
2.7	93.2	GSM253272	ZM_4.5d_SG200_3inf_II	GSE10023	Maize gene expression during infection with Ustilago maydis
2.6	92.9	GSM253273	ZM_4.5d_SG200_3inf_III	GSE10023	Maize gene expression during infection with Ustilago maydis
2.4	92.2	GSM253249	ZM_12h_SG200_3inf_II	GSE10023	Maize gene expression during infection with Ustilago maydis
2.4	92.2	GSM258538	DpDf siblings in family segregating for T5-6b DpDf plants; Biological replicate 4	GSE10243	Profiling expression changes caused by a segmental aneuploid in maize
2.3	91.7	GSM258533	Wild-type siblings in family segregating for T5-6b DpDf plants; Biological replicate 2	GSE10243	Profiling expression changes caused by a segmental aneuploid in maize
2.2	91.3	GSM258535	Wild-type siblings in family segregating for T5-6b DpDf plants; Biological replicate 3	GSE10243	Profiling expression changes caused by a segmental aneuploid in maize
2.2	91.3	GSM323171	Zm_SG200Dpep1_24hpi_II	GSE12892	Maize gene expression during infection with Ustilago maydis strain SG200Dpep1

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.77	0	1039	Zm.16305.1.A1_at	CA398833	-	-	9e-15	At3g15640	cytochrome c oxidase family protein	C.G.	S.X.	Please select
0.01	5e-2	38	Zm.5299.1.S1_at	AY188755.1	Atypical receptor-like kinase MARK	-	3e-4	At1g48480	RKL1	C.G.	S.X.	Please select
0.02	2e-1	36	Zm.17740.1.A1_at	CK370696	hypothetical protein LOC100277215	-	6e+0	At3g29797	-	C.G.	S.X.	Please select
0.01	2e-1	36	Zm.16861.1.S1_at	BM380235	tobamovirus multiplication-like protein	-	4e-2	At4g21790	TOM1 (TOBAMOVIRUS MULTIPLICATION 1)	C.G.	S.X.	Please select
0.02	2e-1	36	Zm.10577.1.A1_at	BQ538417	-	-	5e-1	At5g55630	ATKCO1	C.G.	S.X.	Please select
0.02	8e-1	34	Zm.959.1.A1_at	AY103702.1	photosystem I N subunit1	-	1e-4	At5g64040	PSAN	C.G.	S.X.	Please select
0.01	8e-1	34	Zm.5994.1.A1_at	CF056325	ribonucleoprotein	-	2e-10	At4g24770	RBP31 (31-KDA RNA BINDING PROTEIN)	C.G.	S.X.	Please select
0.01	8e-1	34	Zm.2041.1.A1_at	CO517600	hypothetical protein LOC100191381	-	3e-3	At4g24770	RBP31 (31-KDA RNA BINDING PROTEIN)	C.G.	S.X.	Please select
0.01	8e-1	34	Zm.18352.1.S1_at	CO527044	glucan endo-1,3-beta-glucosidase, acidic isoform	-	1e+1	At5g62470	MYB96 (myb domain protein 96)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	5e-1	36	Arabidopsis thaliana	At5g57685	835875	AtGDU3 (Arabidopsis thaliana GLUTAMINE DUMPER 3)	F:molecular_function unknown;P:secretion by cell;C:integral to membrane;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.12	3e-6	54	Glycine max	GmaAffx.93110.1.S1_x_at	CF808835	-	-	1e-32	At1g80230	cytochrome c oxidase family protein	C.G.	S.X.	Please select
0.50	3e-96	351	Hordeum vulgare	Contig5256_at	Contig5256	-	-	3e-11	At1g80230	cytochrome c oxidase family protein	C.G.	S.X.	Please select
0.57	2e-119	430	Oryza sativa	Os01g0612200	AK071340.1	-	Cytochrome c oxidase subunit Vb	4e-17	At1g80230	cytochrome c oxidase family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.12	1e-2	42	Populus trichocarpa	Ptp.6514.1.S1_s_at	CV273030	hypothetical protein	-	7e-34	At3g15640	cytochrome c oxidase family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.53	0	694	Triticum aestivum	Ta.17994.1.A1_at	CA617159	-	-	3e-1	At5g57685	AtGDU3 (Arabidopsis thaliana GLUTAMINE DUMPER 3)	C.G.	S.X.	Please select
0.02	6e-1	34	Vitis vinifera	1614874_at	BQ799894	similar to latex-abundant protein	-	1e+0	At1g79330	ATMC5 (ARABIDOPSIS THALIANA METACASPASE 5)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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