Gene omics information

Query gene ID	Zm.6339.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.78	92.5	Zm.6339.1.A1_at	AI691450	-	-	3e-1	At5g11930	glutaredoxin family protein	S.X.	H.G.	Please select
0.59	76.1	Zm.13745.1.S1_at	CK986027	-	-	2e-25	At5g25150	TAF5 (TBP-ASSOCIATED FACTOR 5)	S.X.	H.G.	Please select
0.59	76.1	Zm.2684.1.A1_at	AW066853	-	-	3e+0	At1g49510	emb1273 (embryo defective 1273)	S.X.	H.G.	Please select
0.58	75.1	Zm.12739.1.S1_at	BG835843	SR repressor protein	-	2e-1	At3g55460	SCL30	S.X.	H.G.	Please select
0.50	65.7	Zm.9517.1.A1_at	BM269495	-	-	2e+1	Atmg00630	-	S.X.	H.G.	Please select
0.50	65.7	Zm.8632.1.A1_at	BM268513	-	-	5e+0	At3g55672	-	S.X.	H.G.	Please select
0.50	65.7	Zm.12405.1.A1_at	BM381554	alpha/beta hydrolase fold	-	2e+0	At1g64340	unknown protein	S.X.	H.G.	Please select
0.47	59.9	Zm.13289.1.S1_at	CA826954	-	-	7e-2	At1g22210	trehalose-6-phosphate phosphatase, putative	S.X.	H.G.	Please select
0.47	59.9	Zm.13664.1.S1_at	BG836397	-	-	6e-17	At3g15610	transducin family protein / WD-40 repeat family protein	S.X.	H.G.	Please select
0.46	58.4	Zm.16895.1.A1_at	BM075234	-	-	2e+0	At5g15100	PIN8 (PIN-FORMED 8)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
42.5	99.9	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
32.1	99.8	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
25.6	99.6	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
21.4	99.4	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.7	99.4	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.7	99.4	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
19.1	99.2	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.5	98.1	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.2	97.8	GSM320461	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.7	96.5	GSM320458	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	1e-1	36	Zm.1330.1.S1_at	AY104880.1	hypothetical protein LOC100272442	-	4e-2	At4g31580	SRZ-22	C.G.	S.X.	Please select
0.01	1e-1	36	Zm.12927.1.S1_at	CF348822	hypothetical protein LOC100193470	-	2e-11	At5g62190	PRH75	C.G.	S.X.	Please select
0.03	5e-1	34	Zm.9975.1.A1_at	BM074697	-	-	7e-6	At5g64200	ATSC35	C.G.	S.X.	Please select
0.01	5e-1	34	Zm.8816.1.S1_at	CA404105	hypothetical protein LOC100191764	-	1e-24	At3g56310	alpha-galactosidase, putative / melibiase, putative / alpha-D-galactoside galactohydrolase, putative	C.G.	S.X.	Please select
0.03	5e-1	34	Zm.6569.2.S1_a_at	AY107413.1	hypothetical protein LOC100276303	-	1e+0	At3g59900	ARGOS (AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE)	C.G.	S.X.	Please select
0.02	5e-1	34	Zm.354.2.S1_a_at	U37428.1	glossy1	-	5e-2	At4g19150	ankyrin repeat family protein	C.G.	S.X.	Please select
0.01	5e-1	34	Zm.354.1.S1_at	AY505017.1	glossy1	-	7e-2	At4g19150	ankyrin repeat family protein	C.G.	S.X.	Please select
0.02	5e-1	34	Zm.354.2.S1_at	U37428.1	glossy1	-	5e-2	At4g19150	ankyrin repeat family protein	C.G.	S.X.	Please select
0.02	5e-1	34	Zm.18241.1.S1_at	AI738184	PP protein	-	7e-29	At4g31750	WIN2 (HOPW1-1-INTERACTING 2)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	3e-1	36	Arabidopsis thaliana	At5g11930	831066	glutaredoxin family protein	F:electron carrier activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:unknown;PMBO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	6e-3	42	Glycine max	GmaAffx.47911.1.S1_at	BU545348	-	-	9e-2	At1g55530	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.04	5e-1	34	Hordeum vulgare	Contig9513_at	Contig9513	-	-	2e-1	At1g27160	valyl-tRNA synthetase / valine--tRNA ligase-related	C.G.	S.X.	Please select
0.04	1e-1	38	Oryza sativa	Os06g0103000	9634.m00030	-	-	3e-1	At3g29780	RALFL27 (ralf-like 27)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	2e-2	40	Populus trichocarpa	PtpAffx.44007.3.S1_a_at	BU827173	type-a response regulator	-	2e-5	At2g40670	ARR16 (ARABIDOPSIS RESPONSE REGULATOR 16)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.36	9e-94	343	Triticum aestivum	Ta.17064.1.S1_at	CA617202	-	-	3e-1	At5g11930	glutaredoxin family protein	C.G.	S.X.	Please select
0.04	1e+0	32	Vitis vinifera	1619942_at	CF568925	-	-	3e+0	At3g57370	transcription factor IIB (TFIIB) family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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