Gene omics information

Query gene ID	Zm.6278.1.S1_at
Gene name	hypothetical protein LOC100277773
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.0	Zm.6278.1.S1_at	CF015568	hypothetical protein LOC100277773	-	2e-2	At5g53590	auxin-responsive family protein	S.X.	H.G.	Please select
0.67	85.8	ZmAffx.1189.1.S1_at	BE025258	hypothetical protein LOC100274447	-	8e-1	At3g04181	unknown protein	S.X.	H.G.	Please select
0.67	85.8	Zm.1293.1.S1_at	AI691500	hypothetical protein LOC100280057	-	2e-4	At3g46210	3' exoribonuclease family domain 1-containing protein	S.X.	H.G.	Please select
0.67	85.8	Zm.17700.1.S1_at	CK369359	-	-	3e+0	At5g20190	binding	S.X.	H.G.	Please select
0.50	65.7	ZmAffx.1191.1.A1_at	BE025269	-	-	5e-2	At4g23720	unknown protein	S.X.	H.G.	Please select
0.44	55.7	Zm.5052.1.A1_at	CK145364	hypothetical protein LOC100279399	-	6e+0	At5g24313	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
12.0	98.6	GSM202297	Mo17 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
11.6	98.6	GSM202299	Mo17xB73 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
10.6	98.4	GSM202295	Mo17xB73 immature ear tissue, biological replicate 1	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
10.5	98.4	GSM202303	Mo17 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
10.0	98.4	GSM202290	Mo17 immature ear tissue, biological replicate 1	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
9.8	98.3	GSM202306	Mo17xB73 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
9.4	98.3	GSM202296	B73xMo17 immature ear tissue, biological replicate 1	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
9.4	98.3	GSM202307	B73xMo17 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
9.3	98.2	GSM202302	B73xMo17 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
8.0	98.0	GSM202298	B73 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	8e-3	42	Zm.6265.1.A1_at	BG266135	knotted1	-	6e-8	At1g62360	STM (SHOOT MERISTEMLESS)	C.G.	S.X.	Please select
0.01	1e-1	38	Zm.5480.1.A1_at	AY103756.1	glycine-rich RNA-binding protein 7	-	5e-1	At2g46000	unknown protein	C.G.	S.X.	Please select
0.01	5e-1	36	Zm.86.1.A1_at	Y15069.1	cinnamoyl CoA reductase2	-	1e-2	At1g15950	CCR1 (CINNAMOYL COA REDUCTASE 1)	C.G.	S.X.	Please select
0.01	5e-1	36	Zm.7040.2.S1_at	AY104911.1	hypothetical protein LOC100280354	-	2e-45	At5g49910	CPHSC70-2EAT SHOCK PROTEIN 70-2 (CHLOROPLAST HEAT SHOCK PROTEIN 70-2)	C.G.	S.X.	Please select
0.01	5e-1	36	Zm.7036.1.S1_at	CF041561	hypothetical protein LOC100278098	-	2e-8	At2g45860	unknown protein	C.G.	S.X.	Please select
0.01	5e-1	36	Zm.7040.2.S1_a_at	AY104911.1	hypothetical protein LOC100280354	-	2e-45	At5g49910	CPHSC70-2EAT SHOCK PROTEIN 70-2 (CHLOROPLAST HEAT SHOCK PROTEIN 70-2)	C.G.	S.X.	Please select
0.01	5e-1	36	Zm.7040.2.S1_x_at	AY104911.1	hypothetical protein LOC100280354	-	2e-45	At5g49910	CPHSC70-2EAT SHOCK PROTEIN 70-2 (CHLOROPLAST HEAT SHOCK PROTEIN 70-2)	C.G.	S.X.	Please select
0.01	5e-1	36	Zm.5539.1.A1_at	BG842565	hypothetical protein LOC100276652	-	5e+0	At5g03090	unknown protein	C.G.	S.X.	Please select
0.01	5e-1	36	Zm.522.1.S1_at	AF200531.1	cellulose synthase7	-	1e-38	At2g21770	CESA9 (CELLULOSE SYNTHASE A9)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	2e-2	42	Arabidopsis thaliana	At5g53590	835441	auxin-responsive family protein	F:molecular_function unknown;P:response to auxin stimulus;C:cellular_component unknown;PMOFB	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	3e-2	42	Glycine max	Gma.9692.1.A1_at	BG362937	-	-	1e-3	At5g53590	auxin-responsive family protein	C.G.	S.X.	Please select
0.72	0	1507	Hordeum vulgare	Contig8478_at	Contig8478	-	-	1e-2	At1g31060	unknown protein	C.G.	S.X.	Please select
0.60	6e-149	529	Oryza sativa	Os06g0113900	AK061817.1	-	Conserved hypothetical protein	3e+0	At4g37780	MYB87 (MYB DOMAIN PROTEIN 87)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	3e-2	42	Populus trichocarpa	PtpAffx.210354.1.S1_at	pmrna20352	hypothetical protein	-	1e-5	At4g27590	copper-binding protein-related	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.54	0	882	Triticum aestivum	Ta.6663.1.S1_s_at	CK164589	-	-	1e-2	At1g31060	unknown protein	C.G.	S.X.	Please select
0.01	1e+0	34	Vitis vinifera	1618700_at	CF609905	-	-	8e-15	At1g77680	ribonuclease II family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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