Gene omics information

Query gene ID	Zm.6268.1.A1_at
Gene name	hypothetical protein LOC100192813
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.76	91.1	Zm.6268.1.A1_at	BM073308	hypothetical protein LOC100192813	-	2e-3	At2g16740	UBC29 (ubiquitin-conjugating enzyme 29)	S.X.	H.G.	Please select
0.61	79.5	ZmAffx.398.1.A1_at	AI676826	-	-	3e+0	At4g15150	glycine-rich protein	S.X.	H.G.	Please select
0.58	75.1	ZmAffx.936.1.S1_at	AI677620	-	-	3e+0	At3g10490	anac052 (Arabidopsis NAC domain containing protein 52)	S.X.	H.G.	Please select
0.55	71.6	ZmAffx.996.1.A1_at	AI857152	-	-	3e+0	At5g02230	haloacid dehalogenase-like hydrolase family protein	S.X.	H.G.	Please select
0.52	67.3	Zm.16300.1.A1_at	CF018333	hypothetical protein LOC100193263	-	2e-12	At2g40590	40S ribosomal protein S26 (RPS26B)	S.X.	H.G.	Please select
0.52	67.3	Zm.6973.1.A1_at	AY109828.1	Hypothetical protein LOC100216936	-	5e-1	At4g28830	methyltransferase/ nucleic acid binding	S.X.	H.G.	Please select
0.48	61.3	Zm.17521.1.S1_at	CK370540	complex 1 protein containing protein	-	2e+0	At4g39340	unknown protein	S.X.	H.G.	Please select
0.39	45.6	Zm.6532.4.S1_a_at	BM380149	dehydrin 13	-	9e-2	At1g20440	COR47 (COLD-REGULATED 47)	S.X.	H.G.	Please select
0.36	41.3	Zm.1412.1.A1_at	CA405074	actin-like protein 3	-	3e-50	At1g13180	DIS1 (DISTORTED TRICHOMES 1)	S.X.	H.G.	Please select
0.32	33.4	Zm.5313.2.A1_at	CA398418	60S ribosomal protein L12	-	9e-9	At2g37190	60S ribosomal protein L12 (RPL12A)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
7.0	97.7	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.6	97.6	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.3	97.4	GSM253278	ZM_8d_SG200_3inf_II	GSE10023	Maize gene expression during infection with Ustilago maydis
5.7	97.2	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.6	97.1	GSM253282	ZM_8d_SG200_3Alu_III	GSE10023	Maize gene expression during infection with Ustilago maydis
5.2	96.9	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.0	96.7	GSM253281	ZM_8d_SG200_3Alu_II	GSE10023	Maize gene expression during infection with Ustilago maydis
4.9	96.7	GSM385710	Deep-sowing 10d treatment TIBA, biological rep2	GSE15371	Auxin-induced gene expression in mesocotyl elongation of maize inbred line 3681-4 tolerant to deep-sowing
4.7	96.5	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.6	96.4	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.25	2e-26	119	Zm.4820.2.S1_at	CF243727	hypothetical protein LOC100192684	-	3e-30	At5g53300	UBC10 (ubiquitin-conjugating enzyme 10)	C.G.	S.X.	Please select
0.17	2e-26	119	Zm.356.1.S1_at	AF034946.1	hypothetical protein AY104017 /// ubiquitin conjugating enzyme	-	2e-18	At5g53300	UBC10 (ubiquitin-conjugating enzyme 10)	C.G.	S.X.	Please select
0.26	2e-20	99	Zm.4820.1.A1_a_at	BG319643	hypothetical protein LOC100192684	-	1e-35	At5g53300	UBC10 (ubiquitin-conjugating enzyme 10)	C.G.	S.X.	Please select
0.26	2e-20	99	Zm.4820.1.A1_x_at	BG319643	hypothetical protein LOC100192684	-	1e-35	At5g53300	UBC10 (ubiquitin-conjugating enzyme 10)	C.G.	S.X.	Please select
0.25	8e-17	87	Zm.3198.2.A1_a_at	CN844169	ubiquitin-conjugating enzyme E2-17 kDa 9 /// ubiquitin-conjugating enzyme E2-17 kDa 9	-	5e-78	At4g27960	UBC9 (UBIQUITIN CONJUGATING ENZYME 9)	C.G.	S.X.	Please select
0.18	3e-16	85	Zm.3198.1.A1_a_at	CF243896	ubiquitin-conjugating enzyme E2-17 kDa 9 /// ubiquitin-conjugating enzyme E2-17 kDa 9 /// ubiquitin-conjugating enzyme E2-17 kDa 9	-	9e-59	At4g27960	UBC9 (UBIQUITIN CONJUGATING ENZYME 9)	C.G.	S.X.	Please select
0.18	3e-16	85	Zm.3198.1.A1_at	CF243896	-	-	9e-59	At4g27960	UBC9 (UBIQUITIN CONJUGATING ENZYME 9)	C.G.	S.X.	Please select
0.08	2e-14	79	Zm.9314.1.A1_at	CK827497	hypothetical protein LOC100192585	-	2e-31	At5g41700	UBC8 (UBIQUITIN CONJUGATING ENZYME 8)	C.G.	S.X.	Please select
0.09	8e-14	77	Zm.7142.1.S1_at	CF018351	ubiquitin-conjugating enzyme E2-17 kDa /// ubiquitin-conjugating enzyme E2-17 kDa	-	7e-47	At5g53300	UBC10 (ubiquitin-conjugating enzyme 10)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.33	2e-3	44	Arabidopsis thaliana	At2g16740	816175	UBC29 (ubiquitin-conjugating enzyme 29)	F:ubiquitin-protein ligase activity;P:ubiquitin-dependent protein catabolic process;C:cellular_component unknown;MFOPV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.23	4e-12	73	Glycine max	Gma.15387.1.S1_s_at	CD399274	-	-	8e-55	At5g41700	UBC8 (UBIQUITIN CONJUGATING ENZYME 8)	C.G.	S.X.	Please select
0.39	1e-114	412	Hordeum vulgare	Contig9642_at	Contig9642	-	-	1e-13	At4g27960	UBC9 (UBIQUITIN CONJUGATING ENZYME 9)	C.G.	S.X.	Please select
0.39	2e-135	484	Oryza sativa	OsAffx.17659.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.20	1e-8	61	Populus trichocarpa	PtpAffx.14624.3.S1_at	CV226910	hypothetical protein	-	7e-40	At5g41700	UBC8 (UBIQUITIN CONJUGATING ENZYME 8)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.32	1e-97	357	Triticum aestivum	Ta.18704.1.S1_at	BT009605.1	-	-	3e-5	At5g53300	UBC10 (ubiquitin-conjugating enzyme 10)	C.G.	S.X.	Please select
0.18	8e-10	63	Vitis vinifera	1610321_s_at	CB980394	hypothetical protein LOC100251531	-	9e-55	At1g64230	ubiquitin-conjugating enzyme, putative	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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