Gene omics information

Query gene ID	Zm.6256.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.56	74.4	Zm.6256.1.A1_at	AI677614	-	-	8e-1	At2g04038	AtbZIP48 (Arabidopsis thaliana basic leucine-zipper 48)	S.X.	H.G.	Please select
0.59	76.1	Zm.3756.1.A1_at	BE025409	-	-	8e-3	At2g24520	AHA5 (Arabidopsis H(+)-ATPase 5)	S.X.	H.G.	Please select
0.53	69.1	Zm.6714.1.A1_at	CF008274	hypothetical protein LOC100194327	-	7e-3	At4g27230	HTA2 (histone H2A)	S.X.	H.G.	Please select
0.46	58.4	Zm.16278.1.A1_at	CO532740	hypothetical protein LOC100193038	-	7e-1	At1g31830	amino acid permease family protein	S.X.	H.G.	Please select
0.42	51.3	Zm.12227.1.S1_at	AY104350.1	heat shock cognate 70 kDa protein 2	-	2e-53	At3g09440	heat shock cognate 70 kDa protein 3 (HSC70-3) (HSP70-3)	S.X.	H.G.	Please select
0.36	41.3	Zm.15961.1.S1_a_at	CK369834	-	-	4e-1	At3g19920	unknown protein	S.X.	H.G.	Please select
0.31	31.6	Zm.14337.1.S1_at	AY107073.1	hypothetical protein LOC100191876	-	2e+0	At5g12990	CLE40 (CLAVATA3/ESR-RELATED 40)	S.X.	H.G.	Please select
0.30	29.8	Zm.15971.1.S1_at	CF638101	40S ribosomal protein S27a	-	1e-44	At2g47110	UBQ6	S.X.	H.G.	Please select
0.30	29.8	Zm.4849.1.S1_at	AI712259	hypothetical protein LOC100216858	-	3e-3	At1g04750	VAMP721 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 721)	S.X.	H.G.	Please select
0.27	24.6	Zm.7768.1.A1_at	BG836144	-	-	4e-3	At5g23950	C2 domain-containing protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
48.7	100.0	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
33.1	99.9	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.7	98.9	GSM320457	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.1	98.8	GSM320460	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.7	98.8	GSM320456	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.9	98.6	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.3	98.4	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.9	98.3	GSM320463	protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.5	98.1	GSM320458	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.4	97.8	GSM320459	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	1e+0	32	Zm.19053.1.S1_at	CO523639	hypothetical protein LOC100193386	-	2e+0	Atmg01020	-	C.G.	S.X.	Please select
0.02	1e+0	32	Zm.1574.1.S1_at	AY106519.1	-	-	6e-20	At2g24320	unknown protein	C.G.	S.X.	Please select
0.01	5e+0	30	Zm.807.1.A1_at	BG836005	hypothetical protein LOC100216722	-	5e-2	At4g14880	OASA1 (O-ACETYLSERINE (THIOL) LYASE (OAS-TL) ISOFORM A1)	C.G.	S.X.	Please select
0.01	5e+0	30	Zm.8049.1.S1_at	CF009485	hypothetical protein LOC100272989	-	3e-3	At4g05330	AGD13 (ARF-GAP domain 13)	C.G.	S.X.	Please select
0.03	5e+0	30	Zm.7150.2.A1_a_at	CK370688	hypothetical protein LOC100279278	-	9e-8	At5g15470	GAUT14 (Galacturonosyltransferase 14)	C.G.	S.X.	Please select
0.03	5e+0	30	Zm.7150.2.A1_x_at	CK370688	hypothetical protein LOC100279278	-	9e-8	At5g15470	GAUT14 (Galacturonosyltransferase 14)	C.G.	S.X.	Please select
0.03	5e+0	30	Zm.7150.2.A1_at	CK370688	hypothetical protein LOC100279278	-	9e-8	At5g15470	GAUT14 (Galacturonosyltransferase 14)	C.G.	S.X.	Please select
0.01	5e+0	30	Zm.6916.1.S1_at	AW067358	hypothetical protein LOC100273981	-	9e-13	At5g66750	CHR1 (CHROMATIN REMODELING 1)	C.G.	S.X.	Please select
0.01	5e+0	30	Zm.6644.1.S1_at	AY104341.1	hypothetical protein LOC100191256	-	2e-4	At5g42050	-	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	8e-1	34	Arabidopsis thaliana	At2g04038	814936	AtbZIP48 (Arabidopsis thaliana basic leucine-zipper 48)	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMOF	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	4e+0	32	Glycine max	HgAffx.19809.2.S1_at	CA939371	-	-	9e-7	At5g08290	YLS8	C.G.	S.X.	Please select
0.04	2e+0	32	Hordeum vulgare	Contig14584_s_at	Contig14584	-	-	7e-1	At3g59470	far-red impaired responsive family protein / FAR1 family protein	C.G.	S.X.	Please select
0.05	2e+0	34	Oryza sativa	Os04g0284400	9632.m01990	-	-	1e-1	At2g04038	AtbZIP48 (Arabidopsis thaliana basic leucine-zipper 48)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	1e+0	34	Populus trichocarpa	PtpAffx.25650.3.S1_at	CV254559	hypothetical protein	-	3e-3	At2g16990	tetracycline transporter	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.05	3e+0	32	Triticum aestivum	Ta.7162.1.S1_at	BJ316330	-	-	5e-1	At2g40660	tRNA-binding region domain-containing protein	C.G.	S.X.	Please select
0.03	1e+1	28	Vitis vinifera	1619617_at	CF202047.1	-	-	8e-1	At3g48940	remorin family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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