Gene omics information

Query gene ID	Zm.625.1.S1_at
Gene name	MAP kinase phosphatase
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.0	Zm.625.1.S1_at	BG841424	MAP kinase phosphatase	-	1e-1	At1g44020	DC1 domain-containing protein	S.X.	H.G.	Please select
0.57	75.1	Zm.7121.2.S1_at	AF457960.1	-	-	5e-6	At3g12120	FAD2 (FATTY ACID DESATURASE 2)	S.X.	H.G.	Please select
0.50	65.7	Zm.6614.1.A1_at	CO533019	coronatine-insensitive protein 1	-	1e+0	At2g26030	F-box family protein	S.X.	H.G.	Please select
0.33	36.0	Zm.661.2.A1_at	AF290415.1	chloroplast RNA splicing1	-	6e-2	At3g18390	EMB1865 (embryo defective 1865)	S.X.	H.G.	Please select
0.24	19.8	Zm.15932.1.A1_at	AJ577238.1	beta3-glucuronyltransferase	-	8e-1	At5g28610	-	S.X.	H.G.	Please select
0.23	18.6	Zm.17316.1.A1_at	CK369406	-	-	4e+0	At5g38317	LCR58 (Low-molecular-weight cysteine-rich 58)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
16.6	99.1	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.5	98.8	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.6	98.6	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.3	98.4	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.2	98.4	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.9	98.3	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.8	98.3	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.6	98.3	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.1	98.2	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.3	94.7	GSM202298	B73 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	6e-1	36	Zm.5612.1.A1_at	AY106400.1	L-galactose dehydrogenase	-	7e-10	At4g33670	L-galactose dehydrogenase (L-GalDH)	C.G.	S.X.	Please select
0.01	6e-1	36	Zm.5612.1.S1_at	AY106400.1	L-galactose dehydrogenase	-	7e-10	At4g33670	L-galactose dehydrogenase (L-GalDH)	C.G.	S.X.	Please select
0.01	3e+0	34	ZmAffx.951.1.S1_at	AI833422	-	-	8e-1	At1g60970	clathrin adaptor complex small chain family protein	C.G.	S.X.	Please select
0.01	3e+0	34	ZmAffx.951.1.A1_at	AI833422	-	-	8e-1	At1g60970	clathrin adaptor complex small chain family protein	C.G.	S.X.	Please select
0.01	3e+0	34	Zm.6262.1.A1_at	AY104073.1	-	-	1e-2	At5g12970	C2 domain-containing protein	C.G.	S.X.	Please select
0.01	3e+0	34	Zm.5390.1.A1_at	BM078263	single-stranded DNA-binding protein	-	9e+0	At5g41992	CPuORF58 (Conserved peptide upstream open reading frame 58)	C.G.	S.X.	Please select
0.01	3e+0	34	Zm.12572.1.S1_at	BM379732	hypothetical protein LOC100272267	-	2e-1	At1g71080	unknown protein	C.G.	S.X.	Please select
0.01	1e+1	32	ZmAffx.1062.1.A1_at	AI881950	-	-	3e+0	At4g12040	zinc finger (AN1-like) family protein	C.G.	S.X.	Please select
0.01	1e+1	32	ZmAffx.1062.1.S1_at	AI881950	-	-	3e+0	At4g12040	zinc finger (AN1-like) family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	1e-1	40	Arabidopsis thaliana	At1g44020	841002	DC1 domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFOM	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.01	1e-1	40	Glycine max	PsAffx.C125000013_at	PsAffx.C125000013	-	-	3e-1	At2g36080	DNA-binding protein, putative	C.G.	S.X.	Please select
0.04	1e-11	71	Hordeum vulgare	Contig19008_at	Contig19008	-	-	3e-1	At1g74730	unknown protein	C.G.	S.X.	Please select
0.56	1e-156	555	Oryza sativa	Os05g0115800	AK105748.1	-	MAP kinase phosphatase (Fragment)	3e-1	At1g79940	ATERDJ2A	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	8e-3	44	Populus trichocarpa	PtpAffx.207679.1.S1_at	pmrna15248	hypothetical protein	-	2e-33	At3g55270	MKP1 (MITOGEN-ACTIVATED PROTEIN KINASE PHOSPHATASE 1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.36	2e-74	282	Triticum aestivum	Ta.14820.1.S1_at	CD923919	zmMKP1 protein	-	2e-1	At4g18975	pentatricopeptide (PPR) repeat-containing protein	C.G.	S.X.	Please select
0.01	2e+0	34	Vitis vinifera	1617885_at	CF569221.1	-	-	1e-1	At1g51100	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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