Gene omics information

Query gene ID	Zm.6248.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.83	95.6	Zm.6248.1.A1_at	CB833922	-	-	3e+0	At5g07890	myosin heavy chain-related	S.X.	H.G.	Please select
0.91	99.0	Zm.16805.3.S1_x_at	BM381902	basic endochitinase C	-	2e-10	At3g12500	ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE)	S.X.	H.G.	Please select
0.61	79.5	Zm.6246.1.S1_a_at	CB042879	hypothetical protein LOC100274295 /// hypothetical protein LOC100277252	-	1e-5	At2g22080	unknown protein	S.X.	H.G.	Please select
0.56	74.4	Zm.221.1.A1_at	U28376.1	calcium-dependent protein kinase	-	4e-25	At3g20410	CPK9 (calmodulin-domain protein kinase 9)	S.X.	H.G.	Please select
0.53	69.1	Zm.4061.1.S1_at	AI834355	-	-	3e+0	At3g25030	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please select
0.34	37.2	Zm.353.1.S1_at	CF636600	profilin	-	2e-12	At4g29350	PFN2 (PROFILIN 2)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
23.9	99.5	GSM320468	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.1	99.2	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.4	98.8	GSM202298	B73 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
9.9	98.3	GSM320465	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.0	98.2	GSM320472	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.3	98.0	GSM320463	protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.1	98.0	GSM320470	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.6	97.9	GSM320471	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.2	97.8	GSM320469	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.8	96.6	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.09	1e-49	196	Zm.10034.1.S1_at	CK370678	cyclin-dependent kinase inhibitor 2	-	3e+0	At5g35603	unknown protein	C.G.	S.X.	Please select
0.09	6e-18	91	Zm.12352.1.S1_at	CF029529	-	-	1e+0	At1g78660	gamma-glutamyl hydrolase, putative / gamma-Glu-X carboxypeptidase, putative / conjugase, putative	C.G.	S.X.	Please select
0.11	4e-16	85	Zm.9311.2.A1_x_at	CB350735	hypothetical protein LOC100274965	-	5e+0	At3g17860	JAZ3 (JASMONATE-ZIM-DOMAIN PROTEIN 3)	C.G.	S.X.	Please select
0.09	4e-16	85	Zm.12064.1.S1_at	BM276927	-	-	1e+0	At1g04930	hydroxyproline-rich glycoprotein family protein	C.G.	S.X.	Please select
0.11	2e-11	69	Zm.9311.1.A1_a_at	BG842505	hypothetical protein LOC100274965	-	5e+0	At2g29180	unknown protein	C.G.	S.X.	Please select
0.02	8e-2	38	Zm.10716.2.A1_at	BI359458	50S ribosomal protein L14	-	8e-6	At1g17560	HLL (HUELLENLOS)	C.G.	S.X.	Please select
0.01	3e-1	36	Zm.8892.1.A1_at	BM080806	hypothetical protein LOC100193820	-	7e+0	At2g26050	zinc ion binding	C.G.	S.X.	Please select
0.04	3e-1	36	Zm.2392.1.A1_at	BM337512	hypothetical protein LOC100191519 /// hypothetical protein LOC100275274	-	5e+0	At3g15000	-	C.G.	S.X.	Please select
0.01	1e+0	34	Zm.5570.1.A1_at	CF646219	hypothetical protein LOC100191759	-	2e-4	At4g24890	PAP24 (PURPLE ACID PHOSPHATASE 24)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	3e+0	34	Arabidopsis thaliana	At5g07890	830682	myosin heavy chain-related	F:molecular_function unknown;P:biological_process unknown;C:nucleus;MOBFPAV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	4e+0	34	Glycine max	PsAffx.psZS013xG20f_at	PsAffx.psZS013xG20f	-	-	4e+0	At4g17520	nuclear RNA-binding protein, putative	C.G.	S.X.	Please select
0.16	1e-19	97	Hordeum vulgare	bags32b18_at	bags32b18	-	-	3e-1	At1g62301	unknown protein	C.G.	S.X.	Please select
0.03	4e-4	48	Oryza sativa	Os02g0190000	9630.m00886	-	ABC transporter-like protein	1e-7	At3g28345	ABC transporter family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	3e-4	48	Populus trichocarpa	Ptp.7087.1.S1_at	DN488195	multidrug/pheromone exporter, MDR family, ABC transporter family	-	1e-20	At3g28345	ABC transporter family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.10	4e-15	83	Triticum aestivum	TaAffx.31197.1.S1_at	CA626106	-	-	3e+0	At3g17860	JAZ3 (JASMONATE-ZIM-DOMAIN PROTEIN 3)	C.G.	S.X.	Please select
0.02	2e-1	36	Vitis vinifera	1613687_at	CD713993	-	-	4e+0	At4g01590	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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