CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Zm.6247.1.S1_at

Gene name alpha zein 19kDa D1

Organism Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.92 99.2 Zm.6247.1.S1_at AF371267.1 alpha zein 19kDa D1 - 5e-1 At5g62360 invertase/pectin methylesterase inhibitor family protein S.X. H.G.
0.68 86.1 Zm.7035.1.A1_at CD446757 hypothetical protein LOC100280000 - 3e+0 At3g19130 ATRBP47B (RNA-binding protein 47B) S.X. H.G.
0.60 77.8 Zm.7091.1.A1_x_at U23190.1 chlorophyll a/b-binding apoprotein CP24 precursor - 3e-15 At1g15820 LHCB6 (LIGHT HARVESTING COMPLEX PSII SUBUNIT 6) S.X. H.G.
0.60 77.8 Zm.7144.1.A1_at CD437816 chalcone isomerase 3 - 2e+0 At1g73260 trypsin and protease inhibitor family protein / Kunitz family protein S.X. H.G.
0.59 76.1 Zm.16049.2.A1_x_at CF042888 - - 3e-4 At5g03850 40S ribosomal protein S28 (RPS28B) S.X. H.G.
0.58 75.1 Zm.3526.1.S1_at CF041723 hypothetical protein LOC100272649 - 3e+0 At2g01890 PAP8 (PURPLE ACID PHOSPHATASE 8) S.X. H.G.
0.53 69.1 Zm.7121.1.A1_at AY104050.1 hypothetical protein LOC100191328 - 2e-5 At3g12120 FAD2 (FATTY ACID DESATURASE 2) S.X. H.G.
0.52 67.3 Zm.7090.1.S1_at AY105718.1 hypothetical protein LOC100191899 - 6e+0 At5g01740 - S.X. H.G.
0.52 67.3 Zm.14471.3.S1_at CA404574 hypothetical protein LOC100191368 - 2e-25 At2g44120 60S ribosomal protein L7 (RPL7C) S.X. H.G.
0.51 66.4 Zm.16967.1.A1_at CF972515 - - 2e+0 At1g12090 ELP (EXTENSIN-LIKE PROTEIN) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
18.7 99.2 GSM162265 Wild type 1 with array type maize from Affymetrix GSE7030 Phenotypic and molecular characterisation of a novel Bt2 allele in maize
16.0 99.0 GSM205421 B73 19 DAP endosperm tissue biological replicate 1 GSE8278 Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
15.7 99.0 GSM205429 B73xMo17 19 DAP endosperm tissue biological replicate 2 GSE8278 Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
15.6 99.0 GSM205420 Mo17 19 DAP endosperm tissue biological replicate 1 GSE8278 Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
14.9 98.9 GSM205422 Mo17xB73 19 DAP endosperm tissue biological replicate 1 GSE8278 Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
14.6 98.9 GSM205425 B73 19 DAP endosperm tissue biological replicate 2 GSE8278 Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
14.5 98.9 GSM205423 B73xMo17 19 DAP endosperm tissue biological replicate 1 GSE8278 Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
14.4 98.9 GSM205436 B73xMo17 19 DAP endosperm tissue biological replicate 3 GSE8278 Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
13.6 98.8 GSM205433 B73 19 DAP endosperm tissue biological replicate 3 GSE8278 Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
13.0 98.7 GSM205427 Mo17xB73 19 DAP endosperm tissue biological replicate 2 GSE8278 Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.65 0 1072 Zm.33.1.S1_at M12144.1 alpha zein 19kDa D2 - 7e-1 At1g18265 unknown protein C.G. S.X.
0.65 0 1072 Zm.33.1.S1_x_at M12144.1 alpha zein 19kDa D2 - 7e-1 At1g18265 unknown protein C.G. S.X.
0.65 0 1072 Zm.33.1.S1_s_at M12144.1 alpha zein 19kDa D1 /// alpha zein 19kDa D2 /// hypothetical protein LOC100101516 /// z1D alpha zein protein /// z1D alpha zein protein /// z1D alpha zein protein /// z1D alpha zein protein /// z1A alpha zein protein - 7e-1 At1g18265 unknown protein C.G. S.X.
0.10 6e-8 57 Zm.6721.3.A1_at CF016153 Histone H4 - 5e-29 At5g59690 histone H4 C.G. S.X.
0.06 2e-7 56 Zm.34.7.A1_x_at CD447935 Hypothetical protein LOC100192755 - 7e+0 At5g60330 unknown protein C.G. S.X.
0.08 2e-7 56 Zm.34.7.S1_x_at CD447935 Hypothetical protein LOC100192755 - 7e+0 At5g60330 unknown protein C.G. S.X.
0.08 2e-7 56 Zm.34.7.S1_at CD447935 Hypothetical protein LOC100192755 - 7e+0 At4g28210 emb1923 (embryo defective 1923) C.G. S.X.
0.04 2e-7 56 Zm.30.1.S1_a_at AF371264.1 15kD beta zein /// prolamin PPROL 17 /// 15 kDa zein protein - 2e-1 At5g60360 AALP (Arabidopsis aleurain-like protease) C.G. S.X.
0.13 2e-7 56 Zm.2517.4.A1_x_at CA399084 z1A alpha zein protein /// z1A alpha zein protein /// z1A alpha zein protein /// z1A alpha zein protein /// z1A alpha zein protein /// z1A alpha zein protein /// z1A alpha zein protein /// z1A alpha zein protein /// hypothetical protein LOC100274904 /// zein polypeptidesL2b - 2e+0 At5g62360 invertase/pectin methylesterase inhibitor family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 5e-1 36 Arabidopsis thaliana At5g62360 836357 invertase/pectin methylesterase inhibitor family protein F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:cellular_component unknown;PFO - - - C.G. S.X.
0.03 3e+0 34 Glycine max PsAffx.C286000005_s_at PsAffx.C286000005 - - 5e+0 At1g01490 heavy-metal-associated domain-containing protein C.G. S.X.
0.03 9e-1 34 Hordeum vulgare EBro08_SQ002_H13_at EBro08_SQ002_H13 - - 6e-1 At3g43432 unknown protein C.G. S.X.
0.03 1e+0 36 Oryza sativa Os02g0138500 9630.m00372 - Hypothetical protein 6e-5 At5g15740 unknown protein C.G. S.X.
0.03 3e-3 44 Populus trichocarpa PtpAffx.214419.1.S1_at pmrna28046 hypothetical protein - 9e-1 At2g17300 unknown protein C.G. S.X.
0.81 0 866 Triticum aestivum TaAffx.112919.1.S1_at CA626198 - - 4e-1 At5g62360 invertase/pectin methylesterase inhibitor family protein C.G. S.X.
0.03 2e+0 32 Vitis vinifera 1619548_at CF209981 - - 1e+0 At4g18090 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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