Gene omics information

Query gene ID	Zm.6246.2.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.89	96.8	Zm.6246.2.A1_at	AI677558	-	-	9e-7	At2g22080	unknown protein	S.X.	H.G.	Please select
0.81	94.3	Zm.6247.1.S1_at	AF371267.1	alpha zein 19kDa D1	-	5e-1	At5g62360	invertase/pectin methylesterase inhibitor family protein	S.X.	H.G.	Please select
0.68	86.1	Zm.7035.1.A1_at	CD446757	hypothetical protein LOC100280000	-	3e+0	At3g19130	ATRBP47B (RNA-binding protein 47B)	S.X.	H.G.	Please select
0.54	69.8	Zm.7120.1.S1_a_at	AY105061.1	hypothetical protein LOC100193616	-	2e-6	At1g17880	nascent polypeptide-associated complex (NAC) domain-containing protein / BTF3b-like transcription factor, putative	S.X.	H.G.	Please select
0.51	66.4	Zm.7144.1.A1_at	CD437816	chalcone isomerase 3	-	2e+0	At1g73260	trypsin and protease inhibitor family protein / Kunitz family protein	S.X.	H.G.	Please select
0.51	66.4	Zm.3526.1.S1_at	CF041723	hypothetical protein LOC100272649	-	3e+0	At2g01890	PAP8 (PURPLE ACID PHOSPHATASE 8)	S.X.	H.G.	Please select
0.48	61.3	Zm.1323.1.S1_x_at	AY107806.1	hypothetical protein LOC100275312	-	6e+0	At3g30840	unknown protein	S.X.	H.G.	Please select
0.47	59.9	Zm.13232.1.S1_at	CA452744	tyrosine/DOPA decarboxylase 2	-	9e-1	At2g04630	NRPB6B	S.X.	H.G.	Please select
0.46	58.4	Zm.16049.2.A1_x_at	CF042888	-	-	3e-4	At5g03850	40S ribosomal protein S28 (RPS28B)	S.X.	H.G.	Please select
0.46	58.4	Zm.14471.3.S1_at	CA404574	hypothetical protein LOC100191368	-	2e-25	At2g44120	60S ribosomal protein L7 (RPL7C)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
29.1	99.8	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
27.5	99.7	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
27.1	99.7	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
24.7	99.6	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
24.4	99.6	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
23.1	99.5	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
23.0	99.5	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
22.1	99.4	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.7	99.1	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.3	96.9	GSM320460	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.24	3e-94	343	Zm.6246.1.S1_a_at	CB042879	hypothetical protein LOC100274295 /// hypothetical protein LOC100277252	-	1e-5	At2g22080	unknown protein	C.G.	S.X.	Please select
0.03	1e-3	42	Zm.2566.1.S1_at	BM079352	-	-	6e-7	At5g56950	NAP1	C.G.	S.X.	Please select
0.04	1e-3	42	Zm.2135.1.S1_at	CD436684	hypothetical protein LOC100217069	-	4e-26	At5g13850	NACA3 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 3)	C.G.	S.X.	Please select
0.01	6e-3	40	Zm.805.1.S1_at	CA403434	pescadillo	-	1e-12	At5g14520	pescadillo-related	C.G.	S.X.	Please select
0.02	2e-2	38	Zm.14710.1.S1_at	AY232823.1	nucleosome/chromatin assembly factor group A	-	1e-5	At4g26110	NAP1	C.G.	S.X.	Please select
0.06	9e-2	36	Zm.9852.1.A1_at	BM381073	syntaxin 121	-	5e-3	At5g63740	zinc finger protein-related	C.G.	S.X.	Please select
0.03	9e-2	36	Zm.11746.1.A1_at	BM380405	-	-	1e-23	At5g50310	kelch repeat-containing protein	C.G.	S.X.	Please select
0.03	9e-2	36	Zm.11530.1.A1_at	AY105387.1	Hypothetical protein LOC100216571	-	1e-1	At3g52550	-	C.G.	S.X.	Please select
0.03	9e-2	36	Zm.11530.1.S1_at	AY105387.1	hypothetical protein LOC100216571	-	1e-1	At3g52550	-	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.09	9e-7	54	Arabidopsis thaliana	At2g22080	816743	unknown protein	F:molecular_function unknown;P:response to oxidative stress;C:nucleus;MBOFPVA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.07	5e-3	42	Glycine max	HgAffx.18418.1.S1_at	CA940762	-	-	6e-4	At1g44830	AP2 domain-containing transcription factor TINY, putative	C.G.	S.X.	Please select
0.11	1e-13	75	Hordeum vulgare	Contig4512_s_at	Contig4512	-	-	2e-2	At2g22080	unknown protein	C.G.	S.X.	Please select
0.12	1e-28	127	Oryza sativa	Os04g0636800	AK064789.1	-	Conserved hypothetical protein	8e-3	At4g04614	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	1e-9	63	Populus trichocarpa	Ptp.4301.1.S1_s_at	CV280558	-	-	6e-4	At2g22080	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.08	2e-11	69	Triticum aestivum	Ta.6362.1.S1_s_at	BJ284287	-	-	3e-2	At1g52870	peroxisomal membrane protein-related	C.G.	S.X.	Please select
0.11	3e-4	44	Vitis vinifera	1608560_at	CF405443	hypothetical protein LOC100250989	-	3e+0	At3g09890	ankyrin repeat family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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