Gene omics information

Query gene ID	Zm.6246.1.S1_a_at
Gene name	hypothetical protein LOC100274295 /// hypothetical protein LOC100277252
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.0	Zm.6246.1.S1_a_at	CB042879	hypothetical protein LOC100274295 /// hypothetical protein LOC100277252	-	1e-5	At2g22080	unknown protein	S.X.	H.G.	Please select
0.60	77.8	Zm.393.1.S1_at	U41466.1	glossy15	-	3e-7	At5g67180	AP2 domain-containing transcription factor, putative	S.X.	H.G.	Please select
0.60	77.8	Zm.3938.1.A1_at	CB350990	-	-	2e+0	At5g63310	NDPK2 (NUCLEOSIDE DIPHOSPHATE KINASE 2)	S.X.	H.G.	Please select
0.50	65.7	Zm.221.1.A1_at	U28376.1	calcium-dependent protein kinase	-	4e-25	At3g20410	CPK9 (calmodulin-domain protein kinase 9)	S.X.	H.G.	Please select
0.40	48.5	Zm.6248.1.A1_at	CB833922	-	-	3e+0	At5g07890	myosin heavy chain-related	S.X.	H.G.	Please select
0.40	48.5	Zm.2142.1.A1_at	CK369102	hypothetical protein LOC100191429	-	1e-8	At2g42880	ATMPK20	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
3.8	95.5	GSM206288	Upper pulvinus 2 min total RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
3.6	95.2	GSM202298	B73 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
3.6	95.2	GSM202292	B73 immature ear tissue, biological replicate 1	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
3.5	95.1	GSM206294	Lower pulvinus 2 min total RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
3.4	94.9	GSM206290	Upper pulvinus 15 min total RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
3.3	94.7	GSM206295	Lower pulvinus 5 min total RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
3.3	94.7	GSM206289	Upper pulvinus 5 min total RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
3.3	94.7	GSM206296	Lower pulvinus 15 min total RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
3.3	94.7	GSM202304	B73 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
2.9	93.8	GSM206308	Lower pulvinus 15 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.27	9e-106	383	Zm.6246.2.A1_at	AI677558	-	-	9e-7	At2g22080	unknown protein	C.G.	S.X.	Please select
0.03	4e-3	42	Zm.6201.1.A1_at	BE643575	-	-	1e-1	At3g50690	leucine-rich repeat family protein	C.G.	S.X.	Please select
0.03	6e-2	38	ZmAffx.729.1.S1_at	AI740018	-	-	2e-4	At4g02450	glycine-rich protein	C.G.	S.X.	Please select
0.02	6e-2	38	Zm.5723.1.A1_at	BM079835	fiber protein Fb2	-	9e-3	At4g33740	unknown protein	C.G.	S.X.	Please select
0.01	6e-2	38	Zm.518.1.A1_at	AF200526.1	cellulose synthase-2	-	9e-120	At4g32410	CESA1 (CELLULOSE SYNTHASE 1)	C.G.	S.X.	Please select
0.02	6e-2	38	Zm.14502.1.S1_at	CO531791	co-chaperone protein SBA1	-	6e-4	At4g02450	glycine-rich protein	C.G.	S.X.	Please select
0.01	6e-2	38	Zm.13365.2.A1_at	BE123458	alpha-soluble NSF attachment protein	-	7e-1	At1g32880	importin alpha-1 subunit, putative	C.G.	S.X.	Please select
0.02	2e-1	36	Zm.5449.1.A1_at	CF636377	hypothetical protein LOC100273201	-	4e-1	At5g54600	50S ribosomal protein L24, chloroplast (CL24)	C.G.	S.X.	Please select
0.01	2e-1	36	Zm.4041.1.S1_a_at	AY313904.1	yabby10 protein	-	9e-10	At4g00180	YAB3 (YABBY3)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.09	1e-5	52	Arabidopsis thaliana	At2g22080	816743	unknown protein	F:molecular_function unknown;P:response to oxidative stress;C:nucleus;MBOFPVA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	3e-3	44	Glycine max	GmaAffx.88342.1.S1_at	CA784659	-	-	1e-19	At5g28490	LSH1 (LIGHT-DEPENDENT SHORT HYPOCOTYLS 1)	C.G.	S.X.	Please select
0.16	3e-13	75	Hordeum vulgare	Contig4512_s_at	Contig4512	-	-	2e-2	At2g22080	unknown protein	C.G.	S.X.	Please select
0.38	3e-35	151	Oryza sativa	Os04g0636800	AK064789.1	-	Conserved hypothetical protein	8e-3	At4g04614	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.06	6e-11	69	Populus trichocarpa	Ptp.4301.1.S1_s_at	CV280558	-	-	6e-4	At2g22080	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.31	4e-11	69	Triticum aestivum	Ta.6362.1.S1_s_at	BJ284287	-	-	3e-2	At1g52870	peroxisomal membrane protein-related	C.G.	S.X.	Please select
0.04	4e-5	48	Vitis vinifera	1621077_s_at	CB975305	hypothetical protein LOC100256381	-	2e-17	At3g51880	HMGB1 (HIGH MOBILITY GROUP B 1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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