CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Zm.6235.1.A1_at

Gene name hypothetical protein LOC100191165

Organism Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.80 94.0 Zm.6235.1.A1_at AW067088 hypothetical protein LOC100191165 - 2e-41 At1g79500 2-dehydro-3-deoxyphosphooctonate aldolase / phospho-2-dehydro-3-deoxyoctonate aldolase / 3-deoxy-D-manno-octulosonic acid 8-phosphate synthetase (KDSA) S.X. H.G.
0.40 48.5 Zm.14302.2.S1_at AY109645.1 - - 9e-28 At2g27020 PAG1 S.X. H.G.
0.40 48.5 Zm.5423.1.S1_at CD997936 mitochondrial import receptor subunit TOM40 - 3e-3 At3g20000 TOM40 S.X. H.G.
0.36 41.3 Zm.161.1.S1_a_at M77122.1 protein b-32 - 1e-1 At1g65270 unknown protein S.X. H.G.
0.32 33.4 Zm.2220.3.S1_at CA826703 hypothetical protein LOC100273713 - 9e-4 At3g55450 protein kinase, putative S.X. H.G.
0.27 24.6 Zm.788.1.A1_x_at AY103572.1 Hypothetical protein LOC100194151 - 7e-72 At3g27240 cytochrome c1, putative S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
5.3 96.9 GSM206317 Right pulvinus control total RNA biorep 2 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
4.3 96.1 GSM206329 Right pulvinus control polysomal RNA biorep 2 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
3.9 95.7 GSM206327 Upper pulvinus 30 min polysomal RNA biorep 2 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
3.7 95.4 GSM206311 Left pulvinus control total RNA biorep 2 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
3.5 95.1 GSM206315 Upper pulvinus 30 min total RNA biorep 2 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
3.5 95.1 GSM202298 B73 immature ear tissue, biological replicate 2 GSE8176 Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
3.4 94.9 GSM206321 Lower pulvinus 30 min total RNA biorep 2 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
3.3 94.7 GSM206323 Left pulvinus control polysomal RNA biorep 2 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
3.1 94.3 GSM258535 Wild-type siblings in family segregating for T5-6b DpDf plants; Biological replicate 3 GSE10243 Profiling expression changes caused by a segmental aneuploid in maize
3.0 94.0 GSM206326 Upper pulvinus 15 min polysomal RNA biorep 2 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 3e-1 36 Zm.5825.1.A1_at AI649790 hypothetical protein LOC100279429 - 1e-2 At1g10390 nucleoporin family protein C.G. S.X.
0.01 3e-1 36 Zm.12678.2.S1_at CN844593 - - 8e-11 At3g05030 NHX2 (SODIUM HYDROGEN EXCHANGER 2) C.G. S.X.
0.01 1e+0 34 Zm.4273.1.A1_at CF626426 hypothetical protein LOC100217188 - 6e-15 At1g79930 HSP91 C.G. S.X.
0.01 1e+0 34 Zm.338.1.A1_at CF626535 somatic embryogenesis receptor-like kinase1 - 4e-34 At1g71830 SERK1 (SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 1) C.G. S.X.
0.01 1e+0 34 Zm.17277.1.S1_at CF273093 - - 1e-45 At5g57110 ACA8 (AUTOINHIBITED CA2+ -ATPASE, ISOFORM 8) C.G. S.X.
0.03 1e+0 34 Zm.10656.1.A1_at BQ538423 hypothetical protein LOC100216802 - 3e+0 At4g25570 ACYB-2 C.G. S.X.
0.02 5e+0 32 Zm.9818.1.A1_at BM339999 - - 5e+0 At5g14000 anac084 (Arabidopsis NAC domain containing protein 84) C.G. S.X.
0.01 5e+0 32 Zm.8760.1.S1_at CK827613 phenazine biosynthesis protein - 7e-4 At4g02860 catalytic C.G. S.X.
0.01 5e+0 32 Zm.8865.1.A1_at BM267927 hypothetical protein LOC100191271 - 3e-9 At5g35460 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.49 2e-41 171 Arabidopsis thaliana At1g79500 844288 2-dehydro-3-deoxyphosphooctonate aldolase / phospho-2-dehydro-3-deoxyoctonate aldolase / 3-deoxy-D-manno-octulosonic acid 8-phosphate synthetase (KDSA) Encodes a protein with 3-deoxy-8-phosphooctulonate synthase (KDOP synthase) activity which is involved in the biosynthesis of KDO, a component of cell wall rhamnogalacturonan II. - - - C.G. S.X.
0.35 1e-36 155 Glycine max GmaAffx.69072.1.S1_at BM731611 - - 3e-126 At1g79500 2-dehydro-3-deoxyphosphooctonate aldolase / phospho-2-dehydro-3-deoxyoctonate aldolase / 3-deoxy-D-manno-octulosonic acid 8-phosphate synthetase (KDSA) C.G. S.X.
0.25 9e-82 303 Hordeum vulgare Contig6976_s_at Contig6976 - - 3e-26 At1g79500 2-dehydro-3-deoxyphosphooctonate aldolase / phospho-2-dehydro-3-deoxyoctonate aldolase / 3-deoxy-D-manno-octulosonic acid 8-phosphate synthetase (KDSA) C.G. S.X.
0.55 0 908 Oryza sativa Os12g0210800 AK072548.1 - 2-dehydro-3-deoxyphosphooctonate aldolase (EC2.5.1.55) (Phospho-2- dehydro-3-deoxyoctonate aldolase)(3-deoxy-D-manno-octulosonic acid 8- phosphatesynthetase) (KDO-8-phosphate synthetase) (KDO 8-Psynthase) (KDOPS) 6e-72 At1g79500 2-dehydro-3-deoxyphosphooctonate aldolase / phospho-2-dehydro-3-deoxyoctonate aldolase / 3-deoxy-D-manno-octulosonic acid 8-phosphate synthetase (KDSA) C.G. S.X.
0.32 5e-27 123 Populus trichocarpa PtpAffx.24689.1.S1_at CF229133 hypothetical protein - 6e-137 At1g79500 2-dehydro-3-deoxyphosphooctonate aldolase / phospho-2-dehydro-3-deoxyoctonate aldolase / 3-deoxy-D-manno-octulosonic acid 8-phosphate synthetase (KDSA) C.G. S.X.
0.52 0 803 Triticum aestivum Ta.4841.1.S1_at CA616771 - - 4e-64 At1g79500 2-dehydro-3-deoxyphosphooctonate aldolase / phospho-2-dehydro-3-deoxyoctonate aldolase / 3-deoxy-D-manno-octulosonic acid 8-phosphate synthetase (KDSA) C.G. S.X.
0.19 4e-18 91 Vitis vinifera 1612154_at CB970048 hypothetical protein LOC100255394 - 1e-74 At1g79500 2-dehydro-3-deoxyphosphooctonate aldolase / phospho-2-dehydro-3-deoxyoctonate aldolase / 3-deoxy-D-manno-octulosonic acid 8-phosphate synthetase (KDSA) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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