Gene omics information

Query gene ID	Zm.6217.1.A1_at
Gene name	plant-specific domain TIGR01589 family protein
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.57	75.1	Zm.6217.1.A1_at	BE129797	plant-specific domain TIGR01589 family protein	-	7e-1	At1g28600	lipase, putative	S.X.	H.G.	Please select
0.73	89.9	Zm.4825.1.A1_at	AI978181	hypothetical protein LOC100272679	-	1e-1	At1g42480	unknown protein	S.X.	H.G.	Please select
0.73	89.9	Zm.10852.1.A1_at	BM078475	-	-	5e-1	At2g35240	plastid developmental protein DAG, putative	S.X.	H.G.	Please select
0.67	85.8	Zm.6218.1.A1_at	AI677344	developmentally-regulated GTP-binding protein 1	-	4e-58	At4g39520	GTP-binding protein, putative	S.X.	H.G.	Please select
0.56	74.4	Zm.13198.2.A1_a_at	CA400950	-	-	4e+0	At3g43432	unknown protein	S.X.	H.G.	Please select
0.50	65.7	Zm.12201.1.A1_at	BM379502	plastid ADP-glucose pyrophosphorylase large subunit	-	3e-13	At5g19220	APL1 (ADP GLUCOSE PYROPHOSPHORYLASE LARGE SUBUNIT 1)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
9.2	98.2	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.4	98.1	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.0	98.0	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.9	97.7	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.8	97.6	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.3	97.4	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.2	97.4	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.9	97.3	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.6	96.4	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.0	95.8	GSM206325	Upper pulvinus 5 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.38	1e-151	535	Zm.2169.1.A1_at	BM079581	-	-	2e+0	At3g10250	unknown protein	C.G.	S.X.	Please select
0.37	4e-142	504	Zm.18648.1.A1_at	CO521265	plant-specific domain TIGR01589 family protein	-	6e-3	At1g11690	unknown protein	C.G.	S.X.	Please select
0.01	3e-1	36	Zm.18450.1.A1_at	CD996768	-	-	1e-1	At3g18620	zinc finger (DHHC type) family protein	C.G.	S.X.	Please select
0.02	1e+0	34	Zm.839.1.A1_at	BM381718	-	-	1e+0	At4g29570	cytidine deaminase, putative / cytidine aminohydrolase, putative	C.G.	S.X.	Please select
0.02	1e+0	34	Zm.6364.1.A1_at	AI691566	hypothetical protein LOC100277739	-	8e-1	At2g22060	-	C.G.	S.X.	Please select
0.02	1e+0	34	Zm.6364.1.S1_at	T20372	-	-	8e-1	At2g22060	-	C.G.	S.X.	Please select
0.01	1e+0	34	Zm.4662.1.A1_at	BG266353	-	-	1e-1	At2g21060	ATGRP2B (GLYCINE-RICH PROTEIN 2B)	C.G.	S.X.	Please select
0.01	1e+0	34	Zm.356.1.S1_at	AF034946.1	hypothetical protein AY104017 /// ubiquitin conjugating enzyme	-	2e-18	At5g53300	UBC10 (ubiquitin-conjugating enzyme 10)	C.G.	S.X.	Please select
0.01	1e+0	34	Zm.18496.1.S1_at	CO519895	hypothetical protein LOC100217235	-	2e-1	At5g05100	nucleic acid binding	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	7e-1	36	Arabidopsis thaliana	At1g28600	839760	lipase, putative	F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:cell wall;PBOM	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	6e-2	40	Glycine max	PsAffx.C20000079_at	PsAffx.C20000079	-	-	3e-1	At3g15250	unknown protein	C.G.	S.X.	Please select
0.14	8e-33	141	Hordeum vulgare	Contig24298_at	Contig24298	-	-	8e-2	At1g11690	unknown protein	C.G.	S.X.	Please select
0.15	1e-16	89	Oryza sativa	Os02g0137100	AK073353.1	-	Uncharacterized plant-specific domain 01589containing protein	1e-12	At5g04090	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	1e+0	36	Populus trichocarpa	PtpAffx.7025.2.S1_at	CK095019	-	-	1e+0	At1g29480	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.10	2e-4	48	Triticum aestivum	TaAffx.110913.1.S1_at	BJ220949	-	-	4e-15	At5g04090	unknown protein	C.G.	S.X.	Please select
0.02	3e+0	32	Vitis vinifera	1622709_s_at	CB339838	hypothetical protein LOC100263191	-	9e-57	At5g59690	histone H4	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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