Gene omics information

Query gene ID	Zm.6196.2.S1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.0	Zm.6196.2.S1_at	AI677134	-	-	3e+0	At5g26880	tRNA/rRNA methyltransferase (SpoU) family protein	S.X.	H.G.	Please select
0.67	85.8	Zm.3780.1.S1_at	AW438304	low-molecular-weight cysteine-rich protein LCR69	-	9e-2	At1g47317	-	S.X.	H.G.	Please select
0.50	65.7	Zm.13808.2.A1_a_at	AI665043	-	-	4e-7	At4g03240	FH (FRATAXIN HOMOLOG)	S.X.	H.G.	Please select
0.50	65.7	Zm.4845.1.S1_x_at	CD442886	alcohol dehydrogenase1 /// syntaxin-related protein KNOLLE	-	4e-5	At4g03330	SYP123 (SYNTAXIN OF PLANTS 123)	S.X.	H.G.	Please select
0.42	51.3	Zm.17701.1.S1_at	CK370965	hypothetical protein LOC100278172	-	4e-1	At4g19400	actin binding	S.X.	H.G.	Please select
0.31	31.6	Zm.9411.1.S1_at	CA827391	SNF1-related protein kinase regulatory subunit beta-2	-	4e-1	At4g26150	CGA1 (CYTOKININ-RESPONSIVE GATA FACTOR 1)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
36.1	99.9	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
28.7	99.7	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
27.5	99.7	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
27.2	99.7	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
26.0	99.6	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
24.8	99.6	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
24.7	99.6	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.9	99.1	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.5	99.0	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.2	96.0	GSM320461	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.28	6e-120	428	Zm.6196.1.A1_a_at	BG265419	hypothetical protein LOC100279988	-	7e-1	At4g35880	aspartyl protease family protein	C.G.	S.X.	Please select
0.03	1e+0	32	Zm.9576.1.A1_at	CD999634	iron-sulfur assembly protein IscA	-	3e-4	At1g10500	ATCPISCA (chloroplast-localized IscA-like protein)	C.G.	S.X.	Please select
0.01	1e+0	32	Zm.526.1.S1_at	AF242320.1	hypothetical LOC541826	-	1e-3	At5g14620	DRM2 (DOMAINS REARRANGED METHYLTRANSFERASE 2)	C.G.	S.X.	Please select
0.01	1e+0	32	Zm.4286.1.A1_at	AY103792.1	hypothetical protein LOC100274092	-	2e-17	At5g66680	DGL1	C.G.	S.X.	Please select
0.03	1e+0	32	Zm.15379.1.A1_at	BG842487	-	-	5e+0	At2g30424	TCL2 (TRICHOMELESS 2)	C.G.	S.X.	Please select
0.04	5e+0	30	ZmAffx.1142.1.S1_at	AW399873	-	-	2e+0	At5g47550	cysteine protease inhibitor, putative / cystatin, putative	C.G.	S.X.	Please select
0.04	5e+0	30	ZmAffx.1142.1.A1_at	AW399873	-	-	2e+0	At5g47550	cysteine protease inhibitor, putative / cystatin, putative	C.G.	S.X.	Please select
0.01	5e+0	30	Zm.7727.1.S1_s_at	CK986121	polyubiquitin containing 7 ubiquitin monomers /// ubiquitin /// polyubiquitin	-	5e-129	At5g20620	UBQ4	C.G.	S.X.	Please select
0.01	5e+0	30	Zm.476.1.S1_at	AF003551.2	lysine-ketoglutarate reductase/saccharopine dehydr	-	3e-8	At4g33150	lysine-ketoglutarate reductase/saccharopine dehydrogenase bifunctional enzyme	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	3e+0	32	Arabidopsis thaliana	At5g26880	832746	tRNA/rRNA methyltransferase (SpoU) family protein	F:RNA binding, RNA methyltransferase activity;P:RNA processing;C:unknown;BOPM	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	4e-3	42	Glycine max	Gma.11023.2.S1_a_at	AW278528	-	-	2e-1	At2g17760	aspartyl protease family protein	C.G.	S.X.	Please select
0.05	4e-1	34	Hordeum vulgare	HV_CEb0009O04r2_at	HV_CEb0009O04r2	-	-	1e+0	At2g25890	glycine-rich protein / oleosin	C.G.	S.X.	Please select
0.12	7e-52	204	Oryza sativa	Os.6166.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	4e+0	32	Populus trichocarpa	PtpAffx.69611.1.A1_at	CV250831	hypothetical protein	-	6e-23	At2g43460	60S ribosomal protein L38 (RPL38A)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.23	1e-24	113	Triticum aestivum	Ta.8301.1.A1_at	BQ161713	-	-	5e+0	At3g25014	unknown protein	C.G.	S.X.	Please select
0.04	4e+0	30	Vitis vinifera	1616471_at	CF369074	-	-	3e+0	At1g50290	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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