Gene omics information

Query gene ID	Zm.6196.1.A1_a_at
Gene name	hypothetical protein LOC100279988
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	85.8	Zm.6196.1.A1_a_at	BG265419	hypothetical protein LOC100279988	-	7e-1	At4g35880	aspartyl protease family protein	S.X.	H.G.	Please select
0.67	85.8	ZmAffx.238.1.A1_at	AI670250	-	-	1e+1	At3g62140	unknown protein	S.X.	H.G.	Please select
0.55	71.6	Zm.2143.1.A1_at	BE552530	-	-	1e-7	At5g09860	nuclear matrix protein-related	S.X.	H.G.	Please select
0.48	61.3	Zm.15516.1.S1_at	CK787189	hypothetical protein LOC100279678	-	2e+0	At1g60140	ATTPS10 (trehalose phosphate synthase)	S.X.	H.G.	Please select
0.29	28.1	Zm.2960.1.S1_at	CF005604	EMB1688	-	3e-13	At1g67440	emb1688 (embryo defective 1688)	S.X.	H.G.	Please select
0.15	8.6	Zm.1367.1.S1_at	AW927560	-	-	3e-7	At3g13857	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
19.2	99.3	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.4	99.2	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.7	99.1	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.4	99.0	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.3	98.9	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.3	98.9	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.4	98.9	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.4	98.9	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.1	98.7	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.4	92.2	GSM320461	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.28	2e-119	428	Zm.6196.2.S1_at	AI677134	-	-	3e+0	At5g26880	tRNA/rRNA methyltransferase (SpoU) family protein	C.G.	S.X.	Please select
0.02	3e-1	36	Zm.10845.1.A1_at	BI992910	nucellin-like aspartic protease	-	2e-1	At3g22430	unknown protein	C.G.	S.X.	Please select
0.01	1e+0	34	Zm.18372.1.S1_at	CO535024	hypothetical protein LOC100277380	-	2e-1	At3g58290	meprin and TRAF homology domain-containing protein / MATH domain-containing protein	C.G.	S.X.	Please select
0.02	5e+0	32	ZmAffx.651.1.A1_at	AI715079	-	-	1e+1	At5g39580	peroxidase, putative	C.G.	S.X.	Please select
0.02	5e+0	32	ZmAffx.651.1.S1_at	AI715079	-	-	1e+1	At5g39580	peroxidase, putative	C.G.	S.X.	Please select
0.02	5e+0	32	Zm.9576.1.A1_at	CD999634	iron-sulfur assembly protein IscA	-	3e-4	At1g10500	ATCPISCA (chloroplast-localized IscA-like protein)	C.G.	S.X.	Please select
0.01	5e+0	32	Zm.7276.1.S1_at	BI674107	FLU	-	1e-2	At3g14110	FLU (FLUORESCENT IN BLUE LIGHT)	C.G.	S.X.	Please select
0.01	5e+0	32	Zm.526.1.S1_at	AF242320.1	hypothetical LOC541826	-	1e-3	At5g14620	DRM2 (DOMAINS REARRANGED METHYLTRANSFERASE 2)	C.G.	S.X.	Please select
0.01	5e+0	32	Zm.4841.1.S1_at	BQ527900	hypothetical protein LOC100193482	-	7e-23	At3g48730	GSA2 (glutamate-1-semialdehyde 2,1-aminomutase 2)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	7e-1	36	Arabidopsis thaliana	At4g35880	829742	aspartyl protease family protein	F:aspartic-type endopeptidase activity;P:proteolysis;C:anchored to membrane;PMFO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	4e-3	44	Glycine max	Gma.12536.1.S1_at	BG156321	-	-	2e-1	At2g17760	aspartyl protease family protein	C.G.	S.X.	Please select
0.03	1e+0	34	Hordeum vulgare	HV_CEb0009O04r2_at	HV_CEb0009O04r2	-	-	1e+0	At2g25890	glycine-rich protein / oleosin	C.G.	S.X.	Please select
0.49	2e-138	494	Oryza sativa	Os.6166.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	7e-8	59	Populus trichocarpa	PtpAffx.207249.1.S1_at	pmrna14365	hypothetical protein	-	4e-42	At4g35880	aspartyl protease family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.27	7e-38	159	Triticum aestivum	Ta.8301.1.A1_at	BQ161713	-	-	5e+0	At3g25014	unknown protein	C.G.	S.X.	Please select
0.02	5e-2	38	Vitis vinifera	1618250_at	BQ799300	hypothetical protein LOC100264797	-	5e-9	At3g62770	AtATG18a	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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